Browse Element(s) Details


OsAffx.12629.1.S1_at

Description tigr:9630.m05328
TID=OsAffx.12629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5383011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53770Os.27413.1.S1_at11/112+32930668..32939282Isoleucyl-tRNA synthetase, putative, expressed
LOC_Os02g53780Os.7627.1.S1_x_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_s_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_at11/112+32939792..32945022expressed protein
LOC_Os02g53790Os.10695.1.S1_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53790Os.10695.1.S1_s_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53800OsAffx.24856.1.S1_at11/112+32949599..32950086hypothetical protein
LOC_Os02g53810Os.54965.1.S1_at11/112+32951587..32955476expressed protein
LOC_Os02g53820Os.53793.1.S1_at11/112+32956102..32958650Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g53830OsAffx.12629.1.S1_at11/112+32959850..32962563expressed protein
LOC_Os02g53840OsAffx.12630.1.S1_at11/112+32971010..32972057Subtilisin N-terminal Region family protein, expressed
LOC_Os02g53850OsAffx.12631.1.S1_at11/112+32975405..32977751Subtilisin N-terminal Region family protein
LOC_Os02g53860Os.18825.1.S1_at11/112+32979233..32981976subtilase family protein, putative, expressed
LOC_Os02g53870Os.51349.1.S1_at11/112+32985610..32986341expressed protein
LOC_Os02g53870Os.55356.1.S1_x_at1/112+32985610..32986341expressed protein
LOC_Os02g53870Os.35710.2.S1_x_at1/112+32985610..32986341expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12629.1.S1_at--585--2851Chr02:32962105..32962129 (25 bp)
AAGTCTGGATCTTTTGCAAAGCTTC
LOC_Os02g53830
OsAffx.12629.1.S1_at--433--2711Chr02:32962123..32962147 (25 bp)
AAGCTTCAAGATTCCGTGATCCCAT
LOC_Os02g53830
OsAffx.12629.1.S1_at--1132--6351Chr02:32962140..32962164 (25 bp)
GATCCCATCTCCACCTGAGAAAAGT
LOC_Os02g53830
OsAffx.12629.1.S1_at--552--5971Chr02:32962156..32962180 (25 bp)
GAGAAAAGTCTTCCAAAGCCAGAAA
LOC_Os02g53830
OsAffx.12629.1.S1_at--309--1031Chr02:32962203..32962227 (25 bp)
AGGTCTTCTTCCGTTCAGTTTCAAG
LOC_Os02g53830
OsAffx.12629.1.S1_at--347--6271Chr02:32962267..32962291 (25 bp)
GATGTGATCATCAGCCCTACAAATT
LOC_Os02g53830
OsAffx.12629.1.S1_at--186--3011Chr02:32962299..32962323 (25 bp)
AATGACATTGTCACCAGCTGCAACA
LOC_Os02g53830
OsAffx.12629.1.S1_at--812--7391Chr02:32962349..32962373 (25 bp)
GTGATGATGAACACTACCGCTCTCC
LOC_Os02g53830
OsAffx.12629.1.S1_at--237--1491Chr02:32962408..32962432 (25 bp)
AGCAATGCCGCCATGGGTGTCTTTG
LOC_Os02g53830
OsAffx.12629.1.S1_at--960--9411Chr02:32962449..32962518 (25 bp)
TCGTCCACCGCAGGATGTGACAGAG
LOC_Os02g53830
OsAffx.12629.1.S1_at--264--8691Chr02:32962509..32962533 (25 bp)
TGTGACAGAGTCGACCGCCATGGTT
LOC_Os02g53830
Target Sequence 
AAGTCTGGATCTTTTGCAAAGCTTCAAGATTCCGTGATCCCATCTCCACCTGAGAAAAGTCTTCCAAAGCCAGAAAACCC
ATCCCCTAGGAAGCGGAAAGGTCTTCTTCCGTTCAGTTTCAAGTGGGGCAAGCCACAGAACAAAGAGGTATTCCCTGAAG
ATGATGTGATCATCAGCCCTACAAATTGCAGGAGAATGACATTGTCACCAGCTGCAACAAGCAGTTCGGGGAGCAACAGC
GGCAGTGATGATGAACACTACCGCTCTCCGAAGCTGCATACCCGTCAGCCACTCCGAAGGCCCAGCAATGCCGCCATGGG
TGTCTTTGCTTCTCCACCTGCACCTCGTCCACCGCAGGATGTGACAGAGTCGACCGCCATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis