Browse Element(s) Details


Os.54965.1.S1_at

Description gb:AK107205.1
DB_XREF= gi:32992414
TID=Os.54965.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B08, full insert sequence.
FL= gb:AK107205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5381011/11expressed protein
LOC_Os01g145801/11Isocitrate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53760OsAffx.23903.2.S1_s_at9/112+32927057..32927922expressed protein
LOC_Os02g53760Os.13783.1.S1_at2/112+32927057..32927922expressed protein
LOC_Os02g53770Os.27413.1.S1_at11/112+32930668..32939282Isoleucyl-tRNA synthetase, putative, expressed
LOC_Os02g53780Os.7627.1.S1_x_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_s_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_at11/112+32939792..32945022expressed protein
LOC_Os02g53790Os.10695.1.S1_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53790Os.10695.1.S1_s_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53800OsAffx.24856.1.S1_at11/112+32949599..32950086hypothetical protein
LOC_Os02g53810Os.54965.1.S1_at11/112+32951587..32955476expressed protein
LOC_Os02g53820Os.53793.1.S1_at11/112+32956102..32958650Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g53830OsAffx.12629.1.S1_at11/112+32959850..32962563expressed protein
LOC_Os02g53840OsAffx.12630.1.S1_at11/112+32971010..32972057Subtilisin N-terminal Region family protein, expressed
LOC_Os02g53850OsAffx.12631.1.S1_at11/112+32975405..32977751Subtilisin N-terminal Region family protein
LOC_Os02g53860Os.18825.1.S1_at11/112+32979233..32981976subtilase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004450molecular_functionisocitrate dehydrogenase (NADP+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54965.1.S1_at--135--9371Chr02:32954700..32954724 (25 bp)
TCGACTTCCGGCAAACCTCTGATGG
LOC_Os02g53810
Os.54965.1.S1_at--1077--3771Chr02:32954716..32954740 (25 bp)
CTCTGATGGCCAGCTCATAACTGAA
LOC_Os02g53810
Os.54965.1.S1_at--936--10271Chr02:32954865..32954998 (25 bp)
TTTGCAGGGCTTTCTTCGATATGTA
LOC_Os02g53810
Os.54965.1.S1_at--700--7391Chr02:32955004..32955028 (25 bp)
GTGATCCACCTGTTTCAGTCGAGAC
LOC_Os02g53810
Os.54965.1.S1_at--327--10451Chr02:32955233..32955257 (25 bp)
TTAGCATCTTTCTCCGGAGCAATTG
LOC_Os02g53810
Os.54965.1.S1_at--157--1491Chr02:32955250..32955274 (25 bp)
AGCAATTGCCTCCATGCTTTTCATA
LOC_Os02g53810
Os.54965.1.S1_at--1033--10372Chr02:32955267..32955291 (25 bp)
TTTTCATATGGGTTGGCTTTGGCTA
LOC_Os02g53810
Os.54965.1.S1_at--304--10671Chr02:32955293..32955317 (25 bp)
TTCCTGGCCACTGTATCATGTGCAA
LOC_Os02g53810
Os.54965.1.S1_at--209--7351Chr02:32955312..32955336 (25 bp)
GTGCAATGATCCAGCCAGACAATGT
LOC_Os02g53810
Os.54965.1.S1_at--76--2451Chr02:32955362..32955386 (25 bp)
AAAATGAGGGACACCAGCTTTGCTG
LOC_Os02g53810
Os.54965.1.S1_at--649--3391Chr02:32955376..32955400 (25 bp)
CAGCTTTGCTGGTTTAGATTAGGCC
LOC_Os02g53810
Target Sequence 
TCGACTTCCGGCAAACCTCTGATGGCCAGCTCATAACTGAAATTGATGGCAAACAAATTGGTGCTGTCCAGAGCAAAGAT
CTTTGCAGGGCTTTCTTCGATATGTATATTGGTGATCCACCTGTTTCAGTCGAGACCAAACAAGACATTGCACAGAATGT
TGGTGGACTCATTAGAAGATGTTATTGAAAGGCATAATTAAACGACAGACTGGTCGGAATTATTTCATTCTTCGATACAA
GGATACTAGGGTGAGGGGGAAGCATATACAAAGACAGGACTAGGAGGAGAGGATGAACTGTATGTATAGTGATAGATCAA
CCTGTAAACTAAACAGAGCCTTAGCATCTTTCTCCGGAGCAATTGCCTCCATGCTTTTCATATGGGTTGGCTTTGGCTAT
TTCCTGGCCACTGTATCATGTGCAATGATCCAGCCAGACAATGTAAAAGAATGCTTCCTTCCCCCATCTAAAATGAGGGA
CACCAGCTTTGCTGGTTTAGATTAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis