Browse Element(s) Details


Os.27413.1.S1_at

Description gb:AK065948.1
DB_XREF= gi:32975966
TID=Os.27413.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046B21, full insert sequence.
FL= gb:AK121954.1 gb:AK065948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5377011/11Isoleucyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53740Os.22677.1.S1_a_at6/112+32890574..32907894myosin, putative, expressed
LOC_Os02g53740Os.22677.3.S1_x_at2/112+32890574..32907894myosin, putative, expressed
LOC_Os02g53750Os.22676.1.S1_at11/112+32909509..32912645serine/threonine-protein kinase NAK, putative, expressed
LOC_Os02g53760OsAffx.23903.2.S1_s_at9/112+32927057..32927922expressed protein
LOC_Os02g53760Os.13783.1.S1_at2/112+32927057..32927922expressed protein
LOC_Os02g53770Os.27413.1.S1_at11/112+32930668..32939282Isoleucyl-tRNA synthetase, putative, expressed
LOC_Os02g53780Os.7627.1.S1_x_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_s_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_at11/112+32939792..32945022expressed protein
LOC_Os02g53790Os.10695.1.S1_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53790Os.10695.1.S1_s_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53800OsAffx.24856.1.S1_at11/112+32949599..32950086hypothetical protein
LOC_Os02g53810Os.54965.1.S1_at11/112+32951587..32955476expressed protein
LOC_Os02g53820Os.53793.1.S1_at11/112+32956102..32958650Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g53830OsAffx.12629.1.S1_at11/112+32959850..32962563expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27413.1.S1_at--155--6851Chr02:32938639..32938663 (25 bp)
GTTTCGGCAACCAATGACGCTGATG
LOC_Os02g53770
Os.27413.1.S1_at--254--6151Chr02:32938764..32938787 (24 bp)
GAGGTGGAGATCCTTCCTTCCGTAA
LOC_Os02g53770
Os.27413.1.S1_at--856--7051Chr02:32938784..32938808 (25 bp)
GTAAGCTCCGAAACTACATCTGGTG
LOC_Os02g53770
Os.27413.1.S1_at--8--2531Chr02:32938822..32938846 (25 bp)
AACTTTTAGCAGTGAGCGCACCGGC
LOC_Os02g53770
Os.27413.1.S1_at--912--2091Chr02:32938848..32938872 (25 bp)
ACATCTGGATTGGTGTGACTCGCGC
LOC_Os02g53770
Os.27413.1.S1_at--741--291Chr02:32938905..32938929 (25 bp)
ATACCCGAGACGTTGGATCTTTCCT
LOC_Os02g53770
Os.27413.1.S1_at--1048--7271Chr02:32938954..32938978 (25 bp)
GTGCCACGGTGTCATTGATCTGCCA
LOC_Os02g53770
Os.27413.1.S1_at--379--971Chr02:32939027..32939051 (25 bp)
AGGACCACTATCAGCTTCATTTGAA
LOC_Os02g53770
Os.27413.1.S1_at--540--6731Chr02:32939078..32939102 (25 bp)
GTTCTACAATTTTGTTCCCCTCTGA
LOC_Os02g53770
Os.27413.1.S1_at--1039--6971Chr02:32939185..32939209 (25 bp)
GTACCTTGATTTTTGACCATTGCTT
LOC_Os02g53770
Os.27413.1.S1_at--491--71Chr02:32939203..32939227 (25 bp)
ATTGCTTGGCTTCCTGGAGCTGTAA
LOC_Os02g53770
Target Sequence 
GTTTCGGCAACCAATGACGCTGATGCTCTGCACCGCCTGTTTATCACATCTGAGGTGGAGATCCTTCCTTCCGTAAGCTC
CGAAACTACATCTGGTGTATCCTACACTGGAACTTTTAGCAGTGAGCGCACCGGCAACATCTGGATTGGTGTGACTCGCG
CCGATGGCGAAAAATGTGAGAGGTGCTGGAATTATACCCGAGACGTTGGATCTTTCCTTGACCATCCTACTCTTTGTGCC
CGGTGCCACGGTGTCATTGATCTGCCACCAGTTCCTGCTGCCGCGGCTGTCAGCTGAGGCTGCTCGAGAGTGACAAGGAC
CACTATCAGCTTCATTTGAAGATTATAGGTGGAATTAATTGTTTTTGTTCTACAATTTTGTTCCCCTCTGACCGATGATG
CTAGAGGAAGGGGAAACTTGAAGAGGGTTTCGGAAACTTAGTTTCTAACTTCATTTGTTGCGTACAATAAGTTGTACCTT
GATTTTTGACCATTGCTTGGCTTCCTGGAGCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis