Browse Element(s) Details


Os.10695.1.S1_s_at

Description gb:AK103372.1
DB_XREF= gi:32988581
TID=Os.10695.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127A22, full insert sequence.
FL= gb:AK103372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5379011/11Uridylate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53760OsAffx.23903.2.S1_s_at9/112+32927057..32927922expressed protein
LOC_Os02g53760Os.13783.1.S1_at2/112+32927057..32927922expressed protein
LOC_Os02g53770Os.27413.1.S1_at11/112+32930668..32939282Isoleucyl-tRNA synthetase, putative, expressed
LOC_Os02g53780Os.7627.1.S1_x_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_s_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_at11/112+32939792..32945022expressed protein
LOC_Os02g53790Os.10695.1.S1_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53790Os.10695.1.S1_s_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53800OsAffx.24856.1.S1_at11/112+32949599..32950086hypothetical protein
LOC_Os02g53810Os.54965.1.S1_at11/112+32951587..32955476expressed protein
LOC_Os02g53820Os.53793.1.S1_at11/112+32956102..32958650Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g53830OsAffx.12629.1.S1_at11/112+32959850..32962563expressed protein
LOC_Os02g53840OsAffx.12630.1.S1_at11/112+32971010..32972057Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009041molecular_functionuridylate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10695.1.S1_s_at--307--4331Chr02:32948116..32948140 (25 bp)
CCATTTTCGCTCCATATGCGCCAAA
LOC_Os02g53790
Os.10695.1.S1_s_at--1098--5351Chr02:32948908..32948932 (25 bp)
GAAGAGAGTTTTGGCTCATATGAGC
LOC_Os02g53790
Os.10695.1.S1_s_at--1089--8311Chr02:32948920..32948944 (25 bp)
GGCTCATATGAGCTACCTGCATACC
LOC_Os02g53790
Os.10695.1.S1_s_at--604--931Chr02:32948948..32948972 (25 bp)
AGGCAATTTGATTTGTTACTTGCAA
LOC_Os02g53790
Os.10695.1.S1_s_at--615--5191Chr02:32948969..32948993 (25 bp)
GCAATAATTAATTTTGATCCCCATT
LOC_Os02g53790
Os.10695.1.S1_s_at--961--2031Chr02:32949007..32949031 (25 bp)
ACTTTTACGAGAGTTGGCGTATCGT
LOC_Os02g53790
Os.10695.1.S1_s_at--201--6611Chr02:32949019..32949043 (25 bp)
GTTGGCGTATCGTATGTAATGCTGT
LOC_Os02g53790
Os.10695.1.S1_s_at--1037--6911Chr02:32949030..32949054 (25 bp)
GTATGTAATGCTGTACTTGTACCAA
LOC_Os02g53790
Os.10695.1.S1_s_at--373--4731Chr02:32949039..32949063 (25 bp)
GCTGTACTTGTACCAATGTATCATT
LOC_Os02g53790
Os.10695.1.S1_s_at--713--8111Chr02:32949072..32949096 (25 bp)
GGACGATGAAACTTTGTCCTCCCGC
LOC_Os02g53790
Os.10695.1.S1_s_at--939--9231Chr02:32949088..32949112 (25 bp)
TCCTCCCGCCAGTTTCTGGTGGTAT
LOC_Os02g53790
Target Sequence 
CCATTTTCGCTCCATATGCGCCAAATGCCGCTTAGAGCAATAGAAAGGACCACATGAGTGATAAATTGCACCAACTTTAG
AAAAGGCTTTGCTCTCAGGTGTGACTACAAATCTGTGATTACGAAACCGTTGATATAGAAGAGAGTTTTGGCTCATATGA
GCTACCTGCATACCCGTAGGCAATTTGATTTGTTACTTGCAATAATTAATTTTGATCCCCATTTCCTGCTAGATTAACTT
TTACGAGAGTTGGCGTATCGTATGTAATGCTGTACTTGTACCAATGTATCATTTACCTCATGGACGATGAAACTTTGTCC
TCCCGCCAGTTTCTGGTGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10695.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis