Browse Element(s) Details


Os.53793.1.S1_at

Description gb:AK106971.1
DB_XREF= gi:32992180
TID=Os.53793.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-G05, full insert sequence.
FL= gb:AK100190.1 gb:AK106971.1 gb:AK100098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5382011/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53770Os.27413.1.S1_at11/112+32930668..32939282Isoleucyl-tRNA synthetase, putative, expressed
LOC_Os02g53780Os.7627.1.S1_x_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_s_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_at11/112+32939792..32945022expressed protein
LOC_Os02g53790Os.10695.1.S1_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53790Os.10695.1.S1_s_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53800OsAffx.24856.1.S1_at11/112+32949599..32950086hypothetical protein
LOC_Os02g53810Os.54965.1.S1_at11/112+32951587..32955476expressed protein
LOC_Os02g53820Os.53793.1.S1_at11/112+32956102..32958650Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g53830OsAffx.12629.1.S1_at11/112+32959850..32962563expressed protein
LOC_Os02g53840OsAffx.12630.1.S1_at11/112+32971010..32972057Subtilisin N-terminal Region family protein, expressed
LOC_Os02g53850OsAffx.12631.1.S1_at11/112+32975405..32977751Subtilisin N-terminal Region family protein
LOC_Os02g53860Os.18825.1.S1_at11/112+32979233..32981976subtilase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53793.1.S1_at--46--651Chr02:32958106..32958130 (25 bp)
ATGCATGCATGGACACGTGAGGTGA
LOC_Os02g53820
Os.53793.1.S1_at--256--8891Chr02:32958123..32958147 (25 bp)
TGAGGTGATCGATCGGGCACACGAT
LOC_Os02g53820
Os.53793.1.S1_at--759--6611Chr02:32958230..32958254 (25 bp)
GTTGGCCAGCTTATTTCTCGTTGCA
LOC_Os02g53820
Os.53793.1.S1_at--373--3491Chr02:32958277..32958301 (25 bp)
CAGGCGCGCGCAACCGTGTGTAAGT
LOC_Os02g53820
Os.53793.1.S1_at--319--5091Chr02:32958335..32958359 (25 bp)
GCACGGGCGAATACGAACTTTTCCA
LOC_Os02g53820
Os.53793.1.S1_at--887--331Chr02:32958379..32958403 (25 bp)
ATACACGTAGTACAGCAGCCGAGCT
LOC_Os02g53820
Os.53793.1.S1_at--925--5811Chr02:32958399..32958423 (25 bp)
GAGCTTTTCGGTGAGCGTGTACGAC
LOC_Os02g53820
Os.53793.1.S1_at--783--9151Chr02:32958466..32958490 (25 bp)
TACGTGGTACGTTTGGTTAATGCAT
LOC_Os02g53820
Os.53793.1.S1_at--572--191Chr02:32958497..32958521 (25 bp)
ATTTGTGGTTCTTCAAATCCCGTGC
LOC_Os02g53820
Os.53793.1.S1_at--551--2271Chr02:32958511..32958535 (25 bp)
AAATCCCGTGCTCAGGTATGAATTA
LOC_Os02g53820
Os.53793.1.S1_at--730--2091Chr02:32958581..32958605 (25 bp)
ACATCTCTGATGCTGTATATCTTTG
LOC_Os02g53820
Target Sequence 
ATGCATGCATGGACACGTGAGGTGATCGATCGGGCACACGATCGATCGATGACACGAACGAACAATTAATAACGCGAGAA
AGGGCTCGCGCGAGTTGTTGGGGTAGGTCTCGGCTGGTCGTTAGGTTGGCCAGCTTATTTCTCGTTGCACGCACGCACGC
ACGTACGTACGCAGGCGCGCGCAACCGTGTGTAAGTGCGTGTGTGATGGATCGATCAACCGAGCGGCGCGCACGGGCGAA
TACGAACTTTTCCAAGTGATGAAGTGATCACGTATACACGTAGTACAGCAGCCGAGCTTTTCGGTGAGCGTGTACGACGT
GTTTTTTTCATTGGACCGAACATAAAACATGTCAAGTACGTACGTGGTACGTTTGGTTAATGCATAAATGTATTTGTGGT
TCTTCAAATCCCGTGCTCAGGTATGAATTAATTAATCTAGCTAGCTATATGGTGTACTATCTTGTACGAAGAAGAACATC
TCTGATGCTGTATATCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis