Browse Element(s) Details


Os.7627.1.S1_x_at

Description gb:AK058466.1
DB_XREF= gi:32968484
TID=Os.7627.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A12, full insert sequence.
FL= gb:AK058466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5378011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53760OsAffx.23903.2.S1_s_at9/112+32927057..32927922expressed protein
LOC_Os02g53760Os.13783.1.S1_at2/112+32927057..32927922expressed protein
LOC_Os02g53770Os.27413.1.S1_at11/112+32930668..32939282Isoleucyl-tRNA synthetase, putative, expressed
LOC_Os02g53780Os.7627.1.S1_x_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_s_at11/112+32939792..32945022expressed protein
LOC_Os02g53780Os.7627.2.S1_at11/112+32939792..32945022expressed protein
LOC_Os02g53790Os.10695.1.S1_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53790Os.10695.1.S1_s_at11/112+32945736..32949214Uridylate kinase, putative, expressed
LOC_Os02g53800OsAffx.24856.1.S1_at11/112+32949599..32950086hypothetical protein
LOC_Os02g53810Os.54965.1.S1_at11/112+32951587..32955476expressed protein
LOC_Os02g53820Os.53793.1.S1_at11/112+32956102..32958650Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g53830OsAffx.12629.1.S1_at11/112+32959850..32962563expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7627.1.S1_x_at--1021--6351Chr02:32944056..32944080 (25 bp)
GATCCAGCGCATTCGTGTGAGCAAT
LOC_Os02g53780
Os.7627.1.S1_x_at--797--6491Chr02:32944214..32944238 (25 bp)
GATAGACTCAGAGCCATTCTTGGAG
LOC_Os02g53780
Os.7627.1.S1_x_at--798--831Chr02:32944240..32944261 (22 bp)
ATGGAGCGCTCGAGCAGCAAAGCTT
LOC_Os02g53780
Os.7627.1.S1_x_at--193--8851Chr02:32944433..32944457 (25 bp)
TGATCTCCCTTGTTTTCAGGATATA
LOC_Os02g53780
Os.7627.1.S1_x_at--354--7951Chr02:32944451..32944475 (25 bp)
GGATATATTCACCTATGGCGATGTT
LOC_Os02g53780
Os.7627.1.S1_x_at--1061--1011Chr02:32944481..32944505 (25 bp)
AGGTTTATCAACTCTTCAGCTGCTA
LOC_Os02g53780
Os.7627.1.S1_x_at--415--10531Chr02:32944495..32944519 (25 bp)
TTCAGCTGCTAAAGGTGCCACCTGT
LOC_Os02g53780
Os.7627.1.S1_x_at--147--9211Chr02:32944510..32944534 (25 bp)
TGCCACCTGTGATATCCTTGAATTC
LOC_Os02g53780
Os.7627.1.S1_x_at--31--5371Chr02:32944552..32944576 (25 bp)
GAAGAGTGCCAACACAGTCCAGTTT
LOC_Os02g53780
Os.7627.1.S1_x_at--1162--3291Chr02:32944564..32944588 (25 bp)
CACAGTCCAGTTTCGCTAACAACAA
LOC_Os02g53780
Os.7627.1.S1_x_at--127--4951Chr02:32944775..32944799 (25 bp)
GCATTGTTTTCTGAGCACTTGCGAA
LOC_Os02g53780
Target Sequence 
GATCCAGCGCATTCGTGTGAGCAATAATCAGTATATTGAAGAAAATGATAGACTCAGAGCCATTCTTGGAGAATGGAGCG
CTCGAGCAGCAAAGCTTGAAAGAGCACTGGAGGCAGAGCAAATATCGAGCATTGAATTACGGAAGAACATTGCAAAACTC
CGAGGGCAGACTTACAAGGATCAAAACACCTGATCTCCCTTGTTTTCAGGATATATTCACCTATGGCGATGTTTGAGCAG
GTTTATCAACTCTTCAGCTGCTAAAGGTGCCACCTGTGATATCCTTGAATTCCAAACCTCTAGTGATAAGAAGAGTGCCA
ACACAGTCCAGTTTCGCTAACAACAAAGCAAGGTACAAGATCATCACTCAATCTGATATGCATCAAGGAAAGGAAAAATG
CCTTTGCTACACCTCTCTCGTGAATGTACAGATTGATGTTTGTAAATGTTGTTCGAGAGTATGGTGCAGCACTGGTTTTT
TGTGCTTCTACCTGATGCTTCTACAATGACATCTTATCATGGCAAGAGTTGTGCATTGTTTTCTGAGCACTTGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7627.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis