Browse Element(s) Details


Os.13783.1.S1_at

Description gb:AK099428.1
DB_XREF= gi:32984637
TID=Os.13783.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013011N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013011N11, full insert sequence.
FL= gb:AK099428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0486011/11expressed protein
LOC_Os02g537602/11expressed protein
LOC_Os01g634902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04820NANA2+2222760..2224908retrotransposon, putative, centromere-specific
LOC_Os02g04830NANA2+2226405..2227106retrotransposon, putative, centromere-specific
LOC_Os02g04840Os.18948.1.S1_at11/112+2230686..2239226Arabinose kinase, putative, expressed
LOC_Os02g04850Os.54649.1.S1_at11/112+2241066..2242600expressed protein
LOC_Os02g04860OsAffx.23903.2.S1_s_at11/112+2242947..2246169expressed protein
LOC_Os02g04860Os.13783.1.S1_at11/112+2242947..2246169expressed protein
LOC_Os02g04870Os.19194.1.S1_at1/112+2248194..2249253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g04880OsAffx.24101.1.S1_at8/112+2253514..2256950hypothetical protein
LOC_Os02g04880Os.56006.1.S1_at1/112+2253514..2256950hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_x_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_s_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.1.S1_x_at5/112+2263602..2264879hypothetical protein
LOC_Os02g04910Os.14919.1.S1_at5/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04910Os.56216.1.S1_at1/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04910OsAffx.29313.1.S1_at1/112+2266955..2273441transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13783.1.S1_at--118--3613Chr02:32927074..32927098 (25 bp)
CATTGTTGTGAATTGACTGCTGCTG
LOC_Os02g53760
Os.13783.1.S1_at--137--5733Chr02:32927060..32927084 (25 bp)
GACTGCTGCTGTTTACTTACAGGAA
LOC_Os02g53760
Os.13783.1.S1_at--1117--5691Chr02:2243186..2243210 (25 bp)
GACTAGTACCTCAAATGGCTGCCAT
LOC_Os02g04860
Os.13783.1.S1_at--1094--851Chr02:2243172..2243196 (25 bp)
ATGGCTGCCATGTGGTGCATAGTGC
LOC_Os02g04860
Os.13783.1.S1_at--204--7772Chr02:2243159..2243183 (25 bp)
GGTGCATAGTGCTGATCATTAGATC
LOC_Os02g04860
Os.13783.1.S1_at--354--8791Chr02:2243119..2243143 (25 bp)
TGTTATGTGCATAGTAGCTCCCTCT
LOC_Os02g04860
Os.13783.1.S1_at--348--291Chr02:2243109..2243133 (25 bp)
ATAGTAGCTCCCTCTAGCATAGTGC
LOC_Os02g04860
Os.13783.1.S1_at--879--10011Chr02:2243095..2243119 (25 bp)
TAGCATAGTGCTGATCTTGCCCATT
LOC_Os02g04860
Os.13783.1.S1_at--630--431Chr02:2243082..2243106 (25 bp)
ATCTTGCCCATTCAGTGTTTCAGTG
LOC_Os02g04860
Os.13783.1.S1_at--207--3711Chr02:2243052..2243076 (25 bp)
CTAGAAATAGTCCTGATCTTGCCCA
LOC_Os02g04860
Os.13783.1.S1_at--416--2211Chr02:2242979..2243003 (25 bp)
ACAAGCCTGTATGTTGGCATCCAAT
LOC_Os02g04860
Target Sequence 
CATTGTTGTGAATTGACTGCTGCTGTTTACTTACAGGAAGGATGAAGAAATCCTCCAGNTTAGTTAGCATCCACGACTAG
TACCTCAAATGGCTGCCATGTGGTGCATAGTGCTGATCATTAGATCAATTGGTAAAATGATTGTTATGTGCATAGTAGCT
CCCTCTAGCATAGTGCTGATCTTGCCCATTCAGTGTTTCAGTGNTACACCTAGAAATAGTCCTGATCTTGCCCATTATTA
GTGNTTTTAGTAGAGAGTGTACACTGNTGTTGTTACNAAAAACACAAGCCTGTATGTTGGCATCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis