Browse Element(s) Details


Os.54649.1.S1_at

Description gb:AK106374.1
DB_XREF= gi:32991583
TID=Os.54649.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54649 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D01, full insert sequence.
FL= gb:AK106374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0485011/11expressed protein
LOC_Os03g204701/11Membrane steroid binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04820NANA2+2222760..2224908retrotransposon, putative, centromere-specific
LOC_Os02g04830NANA2+2226405..2227106retrotransposon, putative, centromere-specific
LOC_Os02g04840Os.18948.1.S1_at11/112+2230686..2239226Arabinose kinase, putative, expressed
LOC_Os02g04850Os.54649.1.S1_at11/112+2241066..2242600expressed protein
LOC_Os02g04860OsAffx.23903.2.S1_s_at11/112+2242947..2246169expressed protein
LOC_Os02g04860Os.13783.1.S1_at11/112+2242947..2246169expressed protein
LOC_Os02g04870Os.19194.1.S1_at1/112+2248194..2249253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g04880OsAffx.24101.1.S1_at8/112+2253514..2256950hypothetical protein
LOC_Os02g04880Os.56006.1.S1_at1/112+2253514..2256950hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04890OsAffx.11894.1.S1_x_at10/112+2259425..2259989hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_s_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.2.S1_at11/112+2263602..2264879hypothetical protein
LOC_Os02g04900OsAffx.24102.1.S1_x_at5/112+2263602..2264879hypothetical protein
LOC_Os02g04910Os.14919.1.S1_at5/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04910Os.56216.1.S1_at1/112+2266955..2273441transposon protein, putative, Mutator sub-class
LOC_Os02g04910OsAffx.29313.1.S1_at1/112+2266955..2273441transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0030308biological_processnegative regulation of cell growth
GO:0005886cellular_componentplasma membrane
GO:0005496molecular_functionsteroid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54649.1.S1_at--67--9971Chr02:2241590..2241614 (25 bp)
TACCTCGTCCAGCTCGGTGGCGGCA
LOC_Os02g04850
Os.54649.1.S1_at--815--9331Chr02:2241556..2241580 (25 bp)
TCGCCGAGCTGTTCGAGACGACGCG
LOC_Os02g04850
Os.54649.1.S1_at--362--8631Chr02:2241523..2241547 (25 bp)
TGGGAGGACGACCACTCGATACCAA
LOC_Os02g04850
Os.54649.1.S1_at--851--9371Chr02:2241508..2241532 (25 bp)
TCGATACCAACAAGAAGGCTTCATT
LOC_Os02g04850
Os.54649.1.S1_at--953--3331Chr02:2241218..2241242 (25 bp)
CACTGGGTGTTCTGAGCTGAGCGAC
LOC_Os02g04850
Os.54649.1.S1_at--748--4751Chr02:2241203..2241227 (25 bp)
GCTGAGCGACGTTGCAGACAGGTTT
LOC_Os02g04850
Os.54649.1.S1_at--18--1031Chr02:2241184..2241208 (25 bp)
AGGTTTGCAGCAGCCGACGTTGTTG
LOC_Os02g04850
Os.54649.1.S1_at--710--10792Chr03:11579704..11579795 (24 bp)
TTGTTGTGCGTTTGGACTTGCTGCT
LOC_Os03g20470
Os.54649.1.S1_at--383--4711Chr02:2241137..2241161 (25 bp)
GCTGGCTGCATTTGTGATCTTGCGA
LOC_Os02g04850
Os.54649.1.S1_at--590--8831Chr02:2241123..2241147 (25 bp)
TGATCTTGCGATTGTGAGTTTGTGA
LOC_Os02g04850
Os.54649.1.S1_at--213--6871Chr02:2241106..2241130 (25 bp)
GTTTGTGACCAACTGAACCATTGCT
LOC_Os02g04850
Target Sequence 
TACCTCGTCCAGCTCGGTGGCGGCAGGCTGTGCGTCGCCGAGCTGTTCGAGACGACGCGCGTCGAGGTGGGAGGACGACC
ACTCGATACCAACAAGAAGGCTTCATTGAAGACGACGACGCGGCGCTGGGGATTCAATGCCGCCGCCACCGCCGGCGAGG
AGGAGGAGGAGGAGACGGAGGTGAGGGAGAGGTTCGCGGTGGTGACCGGAGTGGAGGTGGAGGCGTCGGCGAGCGGCAAG
GCGCCGCTGCGCATGGCGAGGCGCGCCGTGAGGCGGTACGTGCTCTCCACCGAGACGGTCGTCACGCGCGAGGCCAGACG
ACGCAGCAGCTGGCGGCGCGGCCGGCCGAGGAAGGACGACGACGAGACGCTGCACTGGGTGTTCTGAGCTGAGCGACGTT
GCAGACAGGTTTGCAGCAGCCGACGTTGTTGTTGTTGTGCGTTTGGACTTGCTGCTGGCTGCATTTGTGATCTTGCGATT
GTGAGTTTGTGACCAACTGAACCATTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis