Browse Element(s) Details


Os.19194.1.S1_at

Description gb:AK059981.1
DB_XREF= gi:32969999
TID=Os.19194.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E08, full insert sequence.
FL= gb:AK059981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0791011/11hydrolase, carbon-nitrogen family protein, expressed
LOC_Os02g048701/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07870OsAffx.12773.1.S1_at11/113+3978590..3980770hypothetical protein
LOC_Os03g07880Os.3426.1.S1_at11/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07880Os.3426.2.S1_x_at8/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07890OsAffx.12774.1.S1_s_at11/113+3993626..3995589mitochondrial carrier, putative, expressed
LOC_Os03g07910Os.19194.1.S1_at11/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed
LOC_Os03g07910Os.29823.1.S1_at1/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed
LOC_Os03g07920Os.27536.1.A1_at11/113+4017385..4018620expressed protein
LOC_Os03g07930Os.43567.1.S1_x_at3/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.38172.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.53217.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930OsAffx.11375.1.S1_at1/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0009446biological_processputrescine biosynthesis
GO:0000257molecular_functionnitrilase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0050126molecular_functionN-carbamoylputrescine amidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19194.1.S1_at--1015--7311Chr03:4006369..4006393 (25 bp)
GTGCTCATTTGTTATGCTATCCCGG
LOC_Os03g07910
Os.19194.1.S1_at--893--4851Chr03:4006384..4006408 (25 bp)
GCTATCCCGGTGCATTTAACATGAC
LOC_Os03g07910
Os.19194.1.S1_at--104--8953Chr03:4006405..4006429 (25 bp)
TGACTACAGGGCCATTGCACTGGGA
LOC_Os03g07910
Os.19194.1.S1_at--567--8131Chr03:4006885..4006908 (24 bp)
GGACATTCCACTCTTGTTGGACCTT
LOC_Os03g07910
Os.19194.1.S1_at--80--9971Chr03:4007163..4007187 (25 bp)
TACCGCTGAGCATGAGGAGACCACT
LOC_Os03g07910
Os.19194.1.S1_at--899--5191Chr03:4007336..4007360 (25 bp)
GCAATTTCTTCCTCTGCAATATCAA
LOC_Os03g07910
Os.19194.1.S1_at--265--8591Chr03:4007383..4007407 (25 bp)
TGGTAGATGTCCAGAGATCCGGCTC
LOC_Os03g07910
Os.19194.1.S1_at--619--9991Chr03:4007415..4007439 (25 bp)
TAGCCAGCCTGGATGCATTGCGCCA
LOC_Os03g07910
Os.19194.1.S1_at--546--4551Chr03:4007434..4007458 (25 bp)
GCGCCACTAGGCGTGATCCGTGAAA
LOC_Os03g07910
Os.19194.1.S1_at--911--10411Chr03:4007462..4007486 (25 bp)
TTATTCGTCCGCGAGATGCATGTGC
LOC_Os03g07910
Os.19194.1.S1_at--275--8751Chr03:4007546..4007570 (25 bp)
TGTAACACGTACCTTGCCAAATTGA
LOC_Os03g07910
Target Sequence 
GTGCTCATTTGTTATGCTATCCCGGTGCATTTAACATGACTACAGGGCCATTGCACTGGGAGTTGCTGCAAAGGGCAAGG
GCTGCANGACAATCAGCTGTNTTGTGGCAACCTGTGCACCAGCTCGAGACACCANGTGCAGGTTATATTGCTTGGGGACA
TTCCACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGAGCATGAGGAGACCACTATAATGGCAGAAATTGATT
ATTCATTGATTGATCAGAGGAGGCAATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCAGTTGGTAGATGTC
CAGAGATCCGGCTCTGATGAGTAGCCAGCCTGGATGCATTGCGCCACTAGGCGTGATCCGTGAAAATATTATTCGTCCGC
GAGATGCATGTGCCCACCCTTATCCGCAGCAGTTCACCCAGGAACATTGACTTCGTGTGTGAAGAGGTGACCTGTAACAC
GTACCTTGCCAAATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis