Browse Element(s) Details


OsAffx.11375.1.S1_at

Description tigr:9629.m03649
TID=OsAffx.11375.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3845011/11hypothetical protein
LOC_Os03g079301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38410Os.46715.1.S1_at1/111+21912039..21913992retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38410Os.46715.1.S1_x_at1/111+21912039..21913992retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38420Os.52609.1.S1_at1/111+21914135..21917816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38420OsAffx.22947.2.S1_x_at1/111+21914135..21917816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38430OsAffx.21207.1.S1_at2/111+21930258..21932192hypothetical protein
LOC_Os01g38440Os.43764.1.A1_at3/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.7.S1_x_at2/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.3.S1_x_at1/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.2.S1_x_at1/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38450OsAffx.11375.1.S1_at11/111+21936569..21937894hypothetical protein
LOC_Os01g38460NANA1+21942208..21944427retrotransposon protein, putative, unclassified
LOC_Os01g38480Os.15942.2.S1_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.2.S1_a_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.3.S1_x_at10/111+21950422..21953614expressed protein
LOC_Os01g38490NANA1+21954056..21954812expressed protein
LOC_Os01g38500Os.40827.1.S1_at10/111+21955563..21957624expressed protein
LOC_Os01g38510Os.13624.1.S1_at11/111+21958028..21959974Sec61beta family protein, expressed
LOC_Os01g38520Os.31326.1.S1_at11/111+21960819..21962301expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11375.1.S1_at--191--4691Chr01:21936615..21936639 (25 bp)
GCGGAAAGCGTGTGGCATCGTTCAA
LOC_Os01g38450
OsAffx.11375.1.S1_at--30--2691Chr01:21936620..21936644 (25 bp)
AAGCGTGTGGCATCGTTCAAGTGGA
LOC_Os01g38450
OsAffx.11375.1.S1_at--852--4931Chr01:21936629..21936653 (25 bp)
GCATCGTTCAAGTGGAAGGCGAATG
LOC_Os01g38450
OsAffx.11375.1.S1_at--656--5291Chr01:21936675..21936699 (25 bp)
GAAGGCATGGGCATCTTGGTCCAAA
LOC_Os01g38450
OsAffx.11375.1.S1_at--1092--2131Chr01:21937741..21937765 (25 bp)
ACACGAAGCTACTAACCTGGGTCAC
LOC_Os01g38450
OsAffx.11375.1.S1_at--592--5374Chr11:3689567..3689586 (20 bp)
GAAGCTACTAACCTGGGTCACCCAG
NONE
OsAffx.11375.1.S1_at--653--5371Chr01:21937775..21937799 (25 bp)
GAAGAACAACCACGTCTGGTGACTT
LOC_Os01g38450
OsAffx.11375.1.S1_at--437--1891Chr01:21937786..21937810 (25 bp)
ACGTCTGGTGACTTTCAGGCTTTCA
LOC_Os01g38450
OsAffx.11375.1.S1_at--740--5691Chr01:21937795..21937819 (25 bp)
GACTTTCAGGCTTTCACTACAAGGC
LOC_Os01g38450
OsAffx.11375.1.S1_at--316--4891Chr01:21937804..21937828 (25 bp)
GCTTTCACTACAAGGCATTTCAAAA
LOC_Os01g38450
OsAffx.11375.1.S1_at--483--8053Chr01:21937829..21937853 (25 bp)
GGAGATAATCTATTCTATGCCATTG
LOC_Os01g38450
Target Sequence 
GCGGAAAGCGTGTGGCATCGTTCAAGTGGAAGGCGAATGGCGTTGTTTGGGAGAGTGGAAGAAGGCATGGGCATCTTGGT
CCAAAAATTTTTAGAAAATACACTGAAGGAGGGGGTACACTTTACCCACACGAAGCTACTAACCTGGGTCACCCAGCCCG
TGAAGAACAACCACGTCTGGTGACTTTCAGGCTTTCACTACAAGGCATTTCAAAAGGAGATAATCTATTCTATGCCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis