Browse Element(s) Details


Os.40827.1.S1_at

Description gb:CA767341
DB_XREF= gi:27547341
DB_XREF=AF53-Rpf_07_F01_T7_003.ab1
CLONE=C0002425
TID=Os.40827.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0049O23.18 (OSJNBb0049O23.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3850010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38430OsAffx.21207.1.S1_at2/111+21930258..21932192hypothetical protein
LOC_Os01g38440Os.43764.1.A1_at3/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.7.S1_x_at2/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.3.S1_x_at1/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.2.S1_x_at1/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38450OsAffx.11375.1.S1_at11/111+21936569..21937894hypothetical protein
LOC_Os01g38460NANA1+21942208..21944427retrotransposon protein, putative, unclassified
LOC_Os01g38480Os.15942.2.S1_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.2.S1_a_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.3.S1_x_at10/111+21950422..21953614expressed protein
LOC_Os01g38490NANA1+21954056..21954812expressed protein
LOC_Os01g38500Os.40827.1.S1_at10/111+21955563..21957624expressed protein
LOC_Os01g38510Os.13624.1.S1_at11/111+21958028..21959974Sec61beta family protein, expressed
LOC_Os01g38520Os.31326.1.S1_at11/111+21960819..21962301expressed protein
LOC_Os01g38530Os.38249.2.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38530Os.38249.1.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38540NANA1+21971994..21978146transposon protein, putative, unclassified
LOC_Os01g38550NANA1+21978762..21981985transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40827.1.S1_at--467--3191Chr01:21956443..21956467 (25 bp)
CAATCTCTAGCAGCATTGGAGATGG
LOC_Os01g38500
Os.40827.1.S1_at--483--5011Chr01:21956085..21956109 (25 bp)
GCAGAAGCCATTGCCGGAGTTCCTC
LOC_Os01g38500
Os.40827.1.S1_at--178--1691Chr01:21956080..21956104 (25 bp)
AGCCATTGCCGGAGTTCCTCAAGGA
LOC_Os01g38500
Os.40827.1.S1_at--4--2691Chr01:21955988..21956012 (25 bp)
AAGCTGACGGTGTACATCTCGTCGG
LOC_Os01g38500
Os.40827.1.S1_at--475--1031Chr01:21955957..21955981 (25 bp)
AGGTCGGCTACAAGGACTCCTCCGT
LOC_Os01g38500
Os.40827.1.S1_at--1140--4431Chr01:21955870..21955894 (25 bp)
GCCTCAAGACCAAGATCCTCATCTG
LOC_Os01g38500
Os.40827.1.S1_at--625--1331Chr01:21955864..21955888 (25 bp)
AGACCAAGATCCTCATCTGGACCAA
LOC_Os01g38500
Os.40827.1.S1_at--528--8971Chr01:21955789..21955813 (25 bp)
TGAACAAGGCCAGGAATCGCGACGC
LOC_Os01g38500
Os.40827.1.S1_at--579--2951Chr01:21955784..21955808 (25 bp)
AAGGCCAGGAATCGCGACGCCTACG
LOC_Os01g38500
Os.40827.1.S1_at--117--6591Chr01:21955722..21955746 (25 bp)
GATTGATTTGGGTTAGATTTGCTTG
LOC_Os01g38500
Os.40827.1.S1_at--184--211NONE
ATTTGCTTGGGTTTTGTGTGGAGAT
NONE
Target Sequence 
CAATCTCTAGCAGCATTGGAGATGGNGCCAAATGGATGGTCAACAAGATCAAAGGGAAGATGCAGAAGCCATTGCCGGAG
TTCCTCAAGGAGTACGACCTCCCAGTGGGNCTCTTCCCGCAGGACGCGACCAACTACGAGTTCAACGAGGAGACGAAGAA
GCTGACGGTGTACATCTCGTCGGNCTGCGAGGTCGGCTACAAGGACTCCTCCGTGCTCCGCTTCTCCACCACNGTGACGG
GCTACCTGGAGAANGGGAAGCTGTCGGAGGTCGAGGGCCTCAAGACCAAGATCCTCATCTGGACCAAGGTGANGGCCGTC
AGGACCGAGGCCACCAAGGTGCACTTCGCCGCCGGCATGAACAAGGCCAGGAATCGCGACGCCTACGANGTCGTCAGGGA
TGGCNGTCGGCATAGACAAGNTCTAGATTGATTTGGGTTAGATTTGCTTGGGTTTTGTGTGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis