Browse Element(s) Details


Os.38249.1.S1_at

Description gb:AK065173.1
DB_XREF= gi:32975191
TID=Os.38249.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0697C12.15 (P0697C12.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002C23, full insert sequence.
FL= gb:AK065173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3853011/11early flowering 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38460NANA1+21942208..21944427retrotransposon protein, putative, unclassified
LOC_Os01g38480Os.15942.2.S1_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.2.S1_a_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.3.S1_x_at10/111+21950422..21953614expressed protein
LOC_Os01g38490NANA1+21954056..21954812expressed protein
LOC_Os01g38500Os.40827.1.S1_at10/111+21955563..21957624expressed protein
LOC_Os01g38510Os.13624.1.S1_at11/111+21958028..21959974Sec61beta family protein, expressed
LOC_Os01g38520Os.31326.1.S1_at11/111+21960819..21962301expressed protein
LOC_Os01g38530Os.38249.2.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38530Os.38249.1.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38540NANA1+21971994..21978146transposon protein, putative, unclassified
LOC_Os01g38550NANA1+21978762..21981985transposon protein, putative, unclassified
LOC_Os01g38560NANA1+21988532..21989050expressed protein
LOC_Os01g38570NANA1+21990045..21990706hypothetical protein
LOC_Os01g38580Os.37454.1.S1_at11/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38580Os.40825.1.S1_at11/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38580OsAffx.9447.1.S1_x_at1/111+21992466..21996156decreased apical dominance protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009409biological_processresponse to cold
GO:0009585biological_processred, far-red light phototransduction
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0009909biological_processregulation of flower development
GO:0010031biological_processcircumnutation
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008022molecular_functionprotein C-terminus binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38249.1.S1_at--1015--4651Chr01:21967076..21967100 (25 bp)
GCGGGCTATCATAAAGTAAGTGTAC
LOC_Os01g38530
Os.38249.1.S1_at--978--2991Chr01:21966998..21967022 (25 bp)
AATGATATACTGATTCTTCTATAGT
LOC_Os01g38530
Os.38249.1.S1_at--1026--6871Chr01:21966971..21966995 (25 bp)
GTATAGGGCTGCAAGAATAGCTGTA
LOC_Os01g38530
Os.38249.1.S1_at--1066--3071Chr01:21966956..21966980 (25 bp)
AATAGCTGTAGGCTACTAGGCTCAT
LOC_Os01g38530
Os.38249.1.S1_at--257--4851Chr01:21966945..21966969 (25 bp)
GCTACTAGGCTCATGAGCTGCTCAA
LOC_Os01g38530
Os.38249.1.S1_at--20--5911Chr01:21966931..21966955 (25 bp)
GAGCTGCTCAATCAACTTGCTTTTT
LOC_Os01g38530
Os.38249.1.S1_at--954--351Chr01:21966921..21966945 (25 bp)
ATCAACTTGCTTTTTACCTCAACTC
LOC_Os01g38530
Os.38249.1.S1_at--557--4891Chr01:21966913..21966937 (25 bp)
GCTTTTTACCTCAACTCAAGATCAA
LOC_Os01g38530
Os.38249.1.S1_at--1080--7451Chr01:21966831..21966855 (25 bp)
GTGTGAGTCGAGGTCATATCTTTCT
LOC_Os01g38530
Os.38249.1.S1_at--431--4071Chr01:21966823..21966847 (25 bp)
CGAGGTCATATCTTTCTAGCCTTGT
LOC_Os01g38530
Os.38249.1.S1_at--779--9531Chr01:21966809..21966833 (25 bp)
TCTAGCCTTGTTTCTGCAAACATGT
LOC_Os01g38530
Target Sequence 
GCGGGCTATCATAAAGTAAGTGTACTACACTAGAATAATTTGATTGTATTAAGTATATCATTGATGAAAGCAAAATATAA
TGATATACTGATTCTTCTATAGTAAGTATAGGGCTGCAAGAATAGCTGTAGGCTACTAGGCTCATGAGCTGCTCAATCAA
CTTGCTTTTTACCTCAACTCAAGATCAACTAAAATACAAATGAGATGAGTTTGGGTGTATTTTGTAGTTTGACTGTAAAA
GATGAGTGTGAGTCGAGGTCATATCTTTCTAGCCTTGTTTCTGCAAACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis