Browse Element(s) Details


Os.15942.2.S1_at

Description gb:AK061216.1
DB_XREF= gi:32971234
TID=Os.15942.2
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0049O23.17 (OSJNBb0049O23.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E05, full insert sequence.
FL= gb:AK061216.1 gb:AK070666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3848011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38430OsAffx.21207.1.S1_at2/111+21930258..21932192hypothetical protein
LOC_Os01g38440Os.43764.1.A1_at3/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.7.S1_x_at2/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.3.S1_x_at1/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.2.S1_x_at1/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38450OsAffx.11375.1.S1_at11/111+21936569..21937894hypothetical protein
LOC_Os01g38460NANA1+21942208..21944427retrotransposon protein, putative, unclassified
LOC_Os01g38480Os.15942.2.S1_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.2.S1_a_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.3.S1_x_at10/111+21950422..21953614expressed protein
LOC_Os01g38490NANA1+21954056..21954812expressed protein
LOC_Os01g38500Os.40827.1.S1_at10/111+21955563..21957624expressed protein
LOC_Os01g38510Os.13624.1.S1_at11/111+21958028..21959974Sec61beta family protein, expressed
LOC_Os01g38520Os.31326.1.S1_at11/111+21960819..21962301expressed protein
LOC_Os01g38530Os.38249.2.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38530Os.38249.1.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38540NANA1+21971994..21978146transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15942.2.S1_at--746--1771Chr01:21950598..21950622 (25 bp)
ACCTGGATCATTTCGTGAAGTCTTG
LOC_Os01g38480
Os.15942.2.S1_at--58--2851Chr01:21950581..21950605 (25 bp)
AAGTCTTGCACATGTCTGATATCGA
LOC_Os01g38480
Os.15942.2.S1_at--201--6511Chr01:21950564..21950588 (25 bp)
GATATCGAATGTTTTACCCGTGTCT
LOC_Os01g38480
Os.15942.2.S1_at--846--10331Chr01:21950552..21950576 (25 bp)
TTTACCCGTGTCTCTGATGTTGAAG
LOC_Os01g38480
Os.15942.2.S1_at--214--7171Chr01:21950543..21950567 (25 bp)
GTCTCTGATGTTGAAGGTTCTGCTC
LOC_Os01g38480
Os.15942.2.S1_at--1149--731Chr01:21950504..21950528 (25 bp)
ATGTTTTGCTCATGTCTGACATCTG
LOC_Os01g38480
Os.15942.2.S1_at--285--771Chr01:21950493..21950517 (25 bp)
ATGTCTGACATCTGTGCAGGCCATA
LOC_Os01g38480
Os.15942.2.S1_at--830--7331Chr01:21950480..21950504 (25 bp)
GTGCAGGCCATAGCAAATTGTAATT
LOC_Os01g38480
Os.15942.2.S1_at--517--3171Chr01:21950459..21950483 (25 bp)
AATTGGAAATGCTGCCAGTGCCTTT
LOC_Os01g38480
Os.15942.2.S1_at--260--4791Chr01:21950449..21950473 (25 bp)
GCTGCCAGTGCCTTTTATATGGTAA
LOC_Os01g38480
Os.15942.2.S1_at--796--2911Chr01:21950424..21950448 (25 bp)
AAGGAGCACACTGCGTACGAGAACA
LOC_Os01g38480
Target Sequence 
ACCTGGATCATTTCGTGAAGTCTTGCACATGTCTGATATCGAATGTTTTACCCGTGTCTCTGATGTTGAAGGTTCTGCTC
ATGTCTGATATTGAATGTTTTGCTCATGTCTGACATCTGTGCAGGCCATAGCAAATTGTAATTGGAAATGCTGCCAGTGC
CTTTTATATGGTAAAAGGAGCACACTGCGTACGAGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15942.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis