Browse Element(s) Details


OsAffx.12773.1.S1_at

Description tigr:9631.m00724
TID=OsAffx.12773.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0787011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07800Os.49223.1.S1_at11/113+3949327..3953619RNA recognition motif family protein, expressed
LOC_Os03g07810Os.51089.1.S1_at11/113+3954068..3956526expressed protein
LOC_Os03g07820Os.52560.1.S1_at11/113+3957779..3962643exostosin family protein, putative, expressed
LOC_Os03g07830OsAffx.12772.1.S1_at11/113+3964011..3964967AP2 domain containing protein
LOC_Os03g07840Os.8295.1.S1_at11/113+3965867..3969105Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g07850Os.11726.2.S1_x_at11/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.53180.1.S1_at4/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.41415.1.S1_at1/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07870OsAffx.12773.1.S1_at11/113+3978590..3980770hypothetical protein
LOC_Os03g07880Os.3426.1.S1_at11/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07880Os.3426.2.S1_x_at8/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07890OsAffx.12774.1.S1_s_at11/113+3993626..3995589mitochondrial carrier, putative, expressed
LOC_Os03g07910Os.19194.1.S1_at11/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed
LOC_Os03g07910Os.29823.1.S1_at1/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12773.1.S1_at--767--8251Chr03:3980709..3980733 (25 bp)
GGCAGAAGCAGCTCACCCGTGAGGC
LOC_Os03g07870
OsAffx.12773.1.S1_at--617--1571Chr03:3980214..3980724 (25 bp)
AGCTCACCCGTGAGGCCCGGACTTA
LOC_Os03g07870
OsAffx.12773.1.S1_at--363--7391Chr03:3980205..3980715 (25 bp)
GTGAGGCCCGGACTTATAATGTAAA
LOC_Os03g07870
OsAffx.12773.1.S1_at--122--12Chr08:24384417..24384436 (20 bp)
GGCCCGGACTTATAATGTAAATACT
NONE
OsAffx.12773.1.S1_at--705--351Chr03:3980190..3980214 (25 bp)
ATAATGTAAATACTTGCCGACTATT
LOC_Os03g07870
OsAffx.12773.1.S1_at--68--2273Chr06:23914472..23914736 (25 bp)
AAATACTTGCCGACTATTTTTTGAT
NONE
OsAffx.12773.1.S1_at--1061--8392Chr03:3980149..3980173 (25 bp)
GGCGCCATAAATATAACTACACTCC
LOC_Os03g07870
OsAffx.12773.1.S1_at--530--3111Chr03:3980140..3980164 (25 bp)
AATATAACTACACTCCTGCTACAGA
LOC_Os03g07870
OsAffx.12773.1.S1_at--1065--10151Chr03:3980138..3980162 (25 bp)
TATAACTACACTCCTGCTACAGAAA
LOC_Os03g07870
OsAffx.12773.1.S1_at--942--9851Chr03:3980132..3980156 (25 bp)
TACACTCCTGCTACAGAAAAACAAG
LOC_Os03g07870
OsAffx.12773.1.S1_at--33--2231Chr03:3980117..3980136 (20 bp)
ACAAGAAGCCCAACTTTCAGCTGCT
LOC_Os03g07870
Target Sequence 
GGCAGAAGCAGCTCACCCGTGAGGCCCGGACTTATAATGTAAATACTTGCCGACTATTTTTTGATGAAAAATATGGCGCC
ATAAATATAACTACACTCCTGCTACAGAAAAACAAGAAGCCCAACTTTCAGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis