Browse Element(s) Details


OsAffx.12774.1.S1_s_at

Description tigr:9631.m00726
TID=OsAffx.12774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mitochondrial carrier protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0789011/11mitochondrial carrier, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07840Os.8295.1.S1_at11/113+3965867..3969105Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g07850Os.11726.2.S1_x_at11/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.53180.1.S1_at4/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.41415.1.S1_at1/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07870OsAffx.12773.1.S1_at11/113+3978590..3980770hypothetical protein
LOC_Os03g07880Os.3426.1.S1_at11/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07880Os.3426.2.S1_x_at8/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07890OsAffx.12774.1.S1_s_at11/113+3993626..3995589mitochondrial carrier, putative, expressed
LOC_Os03g07910Os.19194.1.S1_at11/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed
LOC_Os03g07910Os.29823.1.S1_at1/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed
LOC_Os03g07920Os.27536.1.A1_at11/113+4017385..4018620expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12774.1.S1_s_at--320--7091Chr03:3994577..3994601 (25 bp)
GTCAAGACGCGCATCCAGGTAATGG
LOC_Os03g07890
OsAffx.12774.1.S1_s_at--434--10751Chr03:3994757..3994781 (25 bp)
TTGAAGCGGCTCTCGGCCAAGGAAG
LOC_Os03g07890
OsAffx.12774.1.S1_s_at--344--8451Chr03:3994771..3994795 (25 bp)
GGCCAAGGAAGGGTCTCTCGATTAG
LOC_Os03g07890
OsAffx.12774.1.S1_s_at--884--1331Chr03:3994794..3994818 (25 bp)
AGAGGTGTCCTTGATCTAGTGATCA
LOC_Os03g07890
OsAffx.12774.1.S1_s_at--552--1111Chr03:3994811..3994835 (25 bp)
AGTGATCATCAAGTGACCCAACCAA
LOC_Os03g07890
OsAffx.12774.1.S1_s_at--614--8911Chr03:3994824..3994848 (25 bp)
TGACCCAACCAAATTAGCCTCGAAT
LOC_Os03g07890
OsAffx.12774.1.S1_s_at--336--1691Chr03:3994839..3994863 (25 bp)
AGCCTCGAATCGATCGAACCTCGAA
LOC_Os03g07890
OsAffx.12774.1.S1_s_at--924--10311Chr03:3994926..3994950 (25 bp)
TTTCTCATTTGGTTTCTCGATCTGC
LOC_Os03g07890
OsAffx.12774.1.S1_s_at--657--3791Chr03:3994941..3994965 (25 bp)
CTCGATCTGCCGCTATAGAGGAAGG
LOC_Os03g07890
OsAffx.12774.1.S1_s_at--871--4711Chr03:3995008..3995032 (25 bp)
GCTGGTTTTGCTGTCATGTTAGTGA
LOC_Os03g07890
OsAffx.12774.1.S1_s_at--393--2451Chr03:3995048..3995072 (25 bp)
AAAATCTCGGTGGTTTTTGCTGTGC
LOC_Os03g07890
Target Sequence 
GTCAAGACGCGCATCCAGGTAATGGAAACCGACGGCGCGGCGGCGGCGCGGCCGACGCTCAAGAGCACGGTGCGCGGCCT
GCTCAAGGAAGGCGGGTGGGCGGCGTGCTACCGAGGGCTCGGGCCGAGGTGGGGATCCATGTCGCTCTCGGCGGCCACCA
TGGTCACCACCTACGAGTTCTTGAAGCGGCTCTCGGCCAAGGAAGGGTCTCTCGATTAGAGGTGTCCTTGATCTAGTGAT
CATCAAGTGACCCAACCAAATTAGCCTCGAATCGATCGAACCTCGAAGGGTGGTTAATTAGGATTCGTGTATATAGGCCT
AAGATCTTTGATTTAATTTCTTTTTTTTCTTTCTCATTTGGTTTCTCGATCTGCCGCTATAGAGGAAGGGCAAGGAGAAG
CGCTAGAAGGGGTTTTAGGATGCAAAATTTTGCTGGTTTTGCTGTCATGTTAGTGATGATGATGATGATGAAAAATCTCG
GTGGTTTTTGCTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12774.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis