Browse Element(s) Details


Os.27536.1.A1_at

Description gb:AK109502.1
DB_XREF= gi:32994711
TID=Os.27536.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A02, full insert sequence.
FL= gb:AK109502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0792011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07890OsAffx.12774.1.S1_s_at11/113+3993626..3995589mitochondrial carrier, putative, expressed
LOC_Os03g07910Os.19194.1.S1_at11/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed
LOC_Os03g07910Os.29823.1.S1_at1/113+4003494..4007622hydrolase, carbon-nitrogen family protein, expressed
LOC_Os03g07920Os.27536.1.A1_at11/113+4017385..4018620expressed protein
LOC_Os03g07930Os.43567.1.S1_x_at3/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.38172.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.53217.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930OsAffx.11375.1.S1_at1/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07940OsAffx.12775.1.S1_at10/113+4036278..4040425AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27536.1.A1_at--528--5631Chr03:4017825..4017849 (25 bp)
GACAGCGACACGGAGTCCCTGGCGT
LOC_Os03g07920
Os.27536.1.A1_at--405--911Chr03:4017764..4017788 (25 bp)
AGGCGGTGCAGCAGATGCTGCTCCA
LOC_Os03g07920
Os.27536.1.A1_at--1107--1511Chr03:4017755..4017779 (25 bp)
AGCAGATGCTGCTCCAGCGGATGGA
LOC_Os03g07920
Os.27536.1.A1_at--763--1391Chr03:4017608..4017632 (25 bp)
AGACGACCAGAGTGGCGCTGAACCG
LOC_Os03g07920
Os.27536.1.A1_at--64--5451Chr03:4017589..4017613 (25 bp)
GAACCGCGCCATTGGCCATGGGTAT
LOC_Os03g07920
Os.27536.1.A1_at--430--5751Chr03:4017557..4017581 (25 bp)
GACGGAGCGCCAGAGTTGTCTGAAT
LOC_Os03g07920
Os.27536.1.A1_at--1090--6051Chr03:4017545..4017569 (25 bp)
GAGTTGTCTGAATATCTTAGTTGGA
LOC_Os03g07920
Os.27536.1.A1_at--216--11Chr03:4017530..4017554 (25 bp)
CTTAGTTGGAATCAACCGGGCGAGA
LOC_Os03g07920
Os.27536.1.A1_at--326--2951Chr03:4017492..4017516 (25 bp)
AATGGCGGTGTAGTTACTGTAAAAT
LOC_Os03g07920
Os.27536.1.A1_at--735--10051Chr03:4017462..4017486 (25 bp)
TAGTTTGGGATAAGTGTTCTTCCCT
LOC_Os03g07920
Os.27536.1.A1_at--995--10311Chr03:4017438..4017462 (25 bp)
TTTCTTTTTTGATCTCTGGTGTTTT
LOC_Os03g07920
Target Sequence 
GACAGCGACACGGAGTCCCTGGCGTCGTCGACGGTGGTCGACCGCCGCAGGGTGCCCGTGGAGGCGGTGCAGCAGATGCT
GCTCCAGCGGATGGAGATGGAGAGCGACGAGGACGACGACGAGAGCAGCGACGCGAGCTCCGACCTGTTCGAGCTCGAGA
ACTTCGCCGCCATTGCTCCCGCCGGGGCCGCGTACCGGGACGAGCTGCCGGTGTACGAGACGACCAGAGTGGCGCTGAAC
CGCGCCATTGGCCATGGGTATGGCCATGGACGGAGCGCCAGAGTTGTCTGAATATCTTAGTTGGAATCAACCGGGCGAGA
GGGGTAACTGTAAAATGGCGGTGTAGTTACTGTAAAATGCAATTAGTTTGGGATAAGTGTTCTTCCCTTTCTTTTTTGAT
CTCTGGTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27536.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis