Browse Element(s) Details


OsAffx.12775.1.S1_at

Description tigr:9631.m00731
TID=OsAffx.12775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0794010/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07920Os.27536.1.A1_at11/113+4017385..4018620expressed protein
LOC_Os03g07930Os.43567.1.S1_x_at3/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.38172.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.53217.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930OsAffx.11375.1.S1_at1/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07940OsAffx.12775.1.S1_at10/113+4036278..4040425AP2 domain containing protein, expressed
LOC_Os03g07950Os.54025.1.S1_at11/113+4045270..4046191expressed protein
LOC_Os03g07960Os.16997.1.S1_at9/113+4048971..4051471expressed protein
LOC_Os03g07970OsAffx.3169.1.S1_s_at11/113+4052698..4056735expressed protein
LOC_Os03g07970Os.54386.1.S1_at11/113+4052698..4056735expressed protein
LOC_Os03g07970OsAffx.3169.1.S1_at10/113+4052698..4056735expressed protein
LOC_Os03g07980Os.53600.1.S1_at11/113+4058448..4059167expressed protein
LOC_Os03g07990Os.11182.1.S1_at11/113+4060778..4064152GCN5-related N-acetyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009887biological_processorgan morphogenesis
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0019953biological_processsexual reproduction
GO:0030154biological_processcell differentiation
GO:0048316biological_processseed development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12775.1.S1_at--966--2931Chr03:4038167..4038191 (25 bp)
AAGGCAGGAGTTCATTGCCCACTTA
LOC_Os03g07940
OsAffx.12775.1.S1_at--802--5011Chr03:4038164..4038188 (25 bp)
GCAGGAGTTCATTGCCCACTTAAGA
LOC_Os03g07940
OsAffx.12775.1.S1_at--418--6051Chr03:4038161..4038184 (24 bp)
GAGTTCATTGCCCACTTAAGAAGGC
LOC_Os03g07940
OsAffx.12775.1.S1_at--331--4551NONE
GCCCACTTAAGAAGGCATCACCAGC
NONE
OsAffx.12775.1.S1_at--596--991Chr03:4037520..4037544 (25 bp)
AGGATTGGAAGGGTCGCAGGGAACA
LOC_Os03g07940
OsAffx.12775.1.S1_at--579--5671Chr03:4036667..4036691 (25 bp)
GACATCAGCAAGTACGACGTGAAGC
LOC_Os03g07940
OsAffx.12775.1.S1_at--924--2831Chr03:4036658..4036682 (25 bp)
AAGTACGACGTGAAGCGCATCTGCT
LOC_Os03g07940
OsAffx.12775.1.S1_at--53--5771Chr03:4036652..4036676 (25 bp)
GACGTGAAGCGCATCTGCTCCAGCA
LOC_Os03g07940
OsAffx.12775.1.S1_at--872--1711Chr03:4036519..4036543 (25 bp)
ACCACCAGCAGATCAGCGCCGGTGG
LOC_Os03g07940
OsAffx.12775.1.S1_at--663--8351Chr03:4036493..4036517 (25 bp)
GGCGGCGCGTCCGACAACTCGGACA
LOC_Os03g07940
OsAffx.12775.1.S1_at--690--3351Chr03:4036415..4036439 (25 bp)
CACGCCATGAAGTTCGAGGCCGGCG
LOC_Os03g07940
Target Sequence 
AAGGCAGGAGTTCATTGCCCACTTAAGAAGGCATCACCAGCACGGGAGATGGCAGGCAAGGATTGGAAGGGTCGCAGGGA
ACAAGGACCTGTATCTCGGCACCTTCAGCACGCAGGAGGAAGCGGCGGAGGCGTACGACATAGCGGCGATCAAGTTCCGC
GGCCTGAACGCCGTGACCAACTTCGACATCAGCAAGTACGACGTGAAGCGCATCTGCTCCAGCACCCACCTCATCGGCGG
CGACCTCGCGTGCCGCCGCTCCCCGACGCGCATGCTACCACCGGACGCTCCGGCCGGCGCCGCCGGCGTCGACGTCGTCG
TGGCGCCGGGCGACCACCAGCAGATCAGCGCCGGTGGCGGCGGCGCGTCCGACAACTCGGACACCGCCTCCGACGGCCAC
CGCGGCGCGCACCTGCTGCACGGCCTGCAGTACGCGCACGCCATGAAGTTCGAGGCCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis