Browse Element(s) Details


Os.54025.1.S1_at

Description gb:AK101385.1
DB_XREF= gi:32986594
TID=Os.54025.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036F11, full insert sequence.
FL= gb:AK101385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0795011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07930Os.43567.1.S1_x_at3/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.38172.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.53217.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930OsAffx.11375.1.S1_at1/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07940OsAffx.12775.1.S1_at10/113+4036278..4040425AP2 domain containing protein, expressed
LOC_Os03g07950Os.54025.1.S1_at11/113+4045270..4046191expressed protein
LOC_Os03g07960Os.16997.1.S1_at9/113+4048971..4051471expressed protein
LOC_Os03g07970OsAffx.3169.1.S1_s_at11/113+4052698..4056735expressed protein
LOC_Os03g07970Os.54386.1.S1_at11/113+4052698..4056735expressed protein
LOC_Os03g07970OsAffx.3169.1.S1_at10/113+4052698..4056735expressed protein
LOC_Os03g07980Os.53600.1.S1_at11/113+4058448..4059167expressed protein
LOC_Os03g07990Os.11182.1.S1_at11/113+4060778..4064152GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g08000Os.18248.1.S1_at10/113+4069116..4073025C3HC4 zinc finger containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54025.1.S1_at--531--9811Chr03:4045592..4045616 (25 bp)
TAACGAGGAGTGAATCCGGCACCAA
LOC_Os03g07950
Os.54025.1.S1_at--1072--5251Chr03:4045603..4045627 (25 bp)
GAATCCGGCACCAACACAGAGGAGC
LOC_Os03g07950
Os.54025.1.S1_at--996--1791Chr03:4045668..4045692 (25 bp)
ACCGCTACTGCCGAGGTCTTTGTCG
LOC_Os03g07950
Os.54025.1.S1_at--315--10631Chr03:4045703..4045727 (25 bp)
TTGCCGTCGTTTGTGCCGTCGCCAT
LOC_Os03g07950
Os.54025.1.S1_at--723--411Chr03:4045736..4045760 (25 bp)
ATCATCACCGAGGTCGCCGTGTCTA
LOC_Os03g07950
Os.54025.1.S1_at--768--4491Chr03:4045751..4045775 (25 bp)
GCCGTGTCTAAAGGCCTCTAGCCAA
LOC_Os03g07950
Os.54025.1.S1_at--643--9431Chr03:4045890..4045914 (25 bp)
TCGGCTCCATAGGACGTCGTTGCCA
LOC_Os03g07950
Os.54025.1.S1_at--607--7231Chr03:4045941..4045965 (25 bp)
GTCGCCGTCACGCACTTGCACGGGA
LOC_Os03g07950
Os.54025.1.S1_at--912--7232Chr03:4046035..4046059 (25 bp)
GTCCCAGTGTCATAGGCTTATAATG
LOC_Os03g07950
Os.54025.1.S1_at--216--1351Chr03:4046121..4046145 (25 bp)
AGAGCTGGCTATATAAGTGTTTGGA
LOC_Os03g07950
Os.54025.1.S1_at--1061--8811Chr03:4046165..4046189 (25 bp)
TGTTGGAGATACTCTCACTCACACT
LOC_Os03g07950
Target Sequence 
TAACGAGGAGTGAATCCGGCACCAACACAGAGGAGCGCCATCACCACTGTCGTCGTCAAGGTCGCCGTCGCCATCCACCG
CTACTGCCGAGGTCTTTGTCGCCAGCCGTCGTTGCCGTCGTTTGTGCCGTCGCCATTCGCTGCCATCATCACCGAGGTCG
CCGTGTCTAAAGGCCTCTAGCCAAGCACGGCGTCCGCCCCCGCCGTATTCGTCCGACTCCGCCCCCCGCTGGATTCGGGG
TGTGGGGGCGCGACCTCTGCCGCCTCCGTGCGGCCTCCGGCCCCGCGCGGCCTACGCCTCGGCTCCATAGGACGTCGTTG
CCAAGGTCGCCGTCACCATCCTCTGTGCGGTCGCCGTCACGCACTTGCACGGGAAGAAGGCCAAGAGAAGAGGAAGAGGG
AGAGAAAGAGGAGGAAGAAGGGGTAGTAGAGGCTGACGTGTGGGTCCCAGTGTCATAGGCTTATAATGGAGAGTGTTGAT
GGAGAGGCTGTTGGAGTGAGGAATAAGTTTGGCTTGCCAAATTAATTGGAGAGCTGGCTATATAAGTGTTTGGAGAGTCC
GATTTGAAGAGACTGTTGGAGATACTCTCACTCACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis