Browse Element(s) Details

Os.18248.1.S1_at

Description

gb:AK067953.1
DB_XREF= gi:32977971
TID=Os.18248.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128J19, full insert sequence.
FL= gb:AK067953.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g08000	10/11	C3HC4 zinc finger containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g07950	Os.54025.1.S1_at	11/11	3	+	4045270..4046191	expressed protein
LOC_Os03g07960	Os.16997.1.S1_at	9/11	3	+	4048971..4051471	expressed protein
LOC_Os03g07970	OsAffx.3169.1.S1_s_at	11/11	3	+	4052698..4056735	expressed protein
LOC_Os03g07970	Os.54386.1.S1_at	11/11	3	+	4052698..4056735	expressed protein
LOC_Os03g07970	OsAffx.3169.1.S1_at	10/11	3	+	4052698..4056735	expressed protein
LOC_Os03g07980	Os.53600.1.S1_at	11/11	3	+	4058448..4059167	expressed protein
LOC_Os03g07990	Os.11182.1.S1_at	11/11	3	+	4060778..4064152	GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g08000	Os.18248.1.S1_at	10/11	3	+	4069116..4073025	C3HC4 zinc finger containing protein, putative, expressed
LOC_Os03g08010	Os.12625.1.S1_a_at	11/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.1.S1_x_at	9/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.4.S1_x_at	8/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.6.S1_x_at	7/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.2.S1_x_at	6/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.57463.1.S1_x_at	3/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08020	Os.12625.1.S1_a_at	11/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.1.S1_x_at	9/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.4.S1_x_at	8/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.6.S1_x_at	7/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.2.S1_x_at	6/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.57463.1.S1_x_at	2/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08030	OsAffx.25013.1.S1_at	11/11	3	+	4084016..4084915	expressed protein
LOC_Os03g08040	OsAffx.3170.1.S1_at	11/11	3	+	4086826..4089008	hypothetical protein
LOC_Os03g08050	Os.12625.1.S1_a_at	11/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.1.S1_x_at	6/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.4.S1_x_at	5/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.2.S1_x_at	5/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.6.S1_x_at	4/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.57463.1.S1_x_at	3/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.1.S1_a_at	11/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.1.S1_x_at	9/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.4.S1_x_at	8/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.6.S1_x_at	7/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.2.S1_x_at	5/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.57463.1.S1_x_at	3/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0008270	molecular_function	zinc ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18248.1.S1_at--15--827	1	Chr03:4072128..4072152 (25 bp)	GGCAGCTTTTATTCCTTGTGGTCAC	LOC_Os03g08000
Os.18248.1.S1_at--260--817	1	Chr03:4072185..4072209 (25 bp)	GGAACGTCAGTTCGACCCATTGTGC	LOC_Os03g08000
Os.18248.1.S1_at--344--797	1	Chr03:4072244..4072658 (25 bp)	GGATCTACGACAATTGAGGCTTCTT	LOC_Os03g08000
Os.18248.1.S1_at--437--1011	1	Chr03:4072688..4072712 (25 bp)	TATGGTCACCCAGATTGTCTGCGAG	LOC_Os03g08000
Os.18248.1.S1_at--896--643	1	Chr03:4072729..4072753 (25 bp)	GATCATCCTGCGTGCACTAGTCTAA	LOC_Os03g08000
Os.18248.1.S1_at--546--575	1	Chr03:4072803..4072827 (25 bp)	GACGTGTTAGTCACTCCCAGGAGAA	LOC_Os03g08000
Os.18248.1.S1_at--321--645	1	Chr03:4072842..4072866 (25 bp)	GATCACCGGATACTTTTCATAGTCG	LOC_Os03g08000
Os.18248.1.S1_at--790--695	1	Chr03:4072878..4072902 (25 bp)	GTAGCTAGCCAAACTGCCAGAGTCA	LOC_Os03g08000
Os.18248.1.S1_at--723--589	1	Chr03:4072904..4072928 (25 bp)	GAGCTGACGCCTATAGTTGCAATTA	LOC_Os03g08000
Os.18248.1.S1_at--644--365	1	Chr03:4072958..4072982 (25 bp)	CTTCTCATGTCTGTGCATTCTGTAA	LOC_Os03g08000
Os.18248.1.S1_at--557--941	1	NONE	TCGGATTTTTTGACCGGCCGCGAAT	NONE

Target Sequence

GGCAGCTTTTATTCCTTGTGGTCACCTTGTCTGCTGCTGCAAATGTGCACTGATTGTGGAACGTCAGTTCGACCCATTGT
GCCCTATGTGTCGGCAAGACATCCGATACATGATAAGGATCTACGACAATTGAGGCTTCTTGATGTTTTGCTNANAACCC
TTCGANNCTGTATGGTCACCCAGATTGTCTGCGAGCCTGAAGACCTNCAACTGATCATCCTGCGTGCACTAGTCTAAGCT
ACTTGGCTAACAAAACTATGTTACCCTGAANTTTNGTGTATATATATGACGTGTTAGTCACTCCCAGGAGAACTCATATG
GGCAGAGATCACCGGATACTTTTCATAGTCGCATAGAATCCTGTAGCTAGCCAAACTGCCAGAGTCATGAGCTGACGCCT
ATAGTTGCAATTACAGTACTACCAAGTTTTTGTTGGCTCTCCCTTCTCATGTCTGTGCATTCTGTAAAGATGGTTTTNCN
GCTAGCNNAAAAGTATGATGGNTTCGGATTTTTTGACCGGCCGCGAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis