Browse Element(s) Details

OsAffx.3170.1.S1_at

Description

tigr:9631.m00740
TID=OsAffx.3170.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g08040	11/11	hypothetical protein
LOC_Os03g30760	1/11	retrotransposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g07990	Os.11182.1.S1_at	11/11	3	+	4060778..4064152	GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g08000	Os.18248.1.S1_at	10/11	3	+	4069116..4073025	C3HC4 zinc finger containing protein, putative, expressed
LOC_Os03g08010	Os.12625.1.S1_a_at	11/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.1.S1_x_at	9/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.4.S1_x_at	8/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.6.S1_x_at	7/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.12625.2.S1_x_at	6/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08010	Os.57463.1.S1_x_at	3/11	3	+	4074305..4076350	Elongation factor 1-alpha, putative
LOC_Os03g08020	Os.12625.1.S1_a_at	11/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.1.S1_x_at	9/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.4.S1_x_at	8/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.6.S1_x_at	7/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.12625.2.S1_x_at	6/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020	Os.57463.1.S1_x_at	2/11	3	+	4079852..4081790	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08030	OsAffx.25013.1.S1_at	11/11	3	+	4084016..4084915	expressed protein
LOC_Os03g08040	OsAffx.3170.1.S1_at	11/11	3	+	4086826..4089008	hypothetical protein
LOC_Os03g08050	Os.12625.1.S1_a_at	11/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.1.S1_x_at	6/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.4.S1_x_at	5/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.2.S1_x_at	5/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.12625.6.S1_x_at	4/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050	Os.57463.1.S1_x_at	3/11	3	+	4089486..4092860	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.1.S1_a_at	11/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.1.S1_x_at	9/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.4.S1_x_at	8/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.6.S1_x_at	7/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.12625.2.S1_x_at	5/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060	Os.57463.1.S1_x_at	3/11	3	+	4096035..4098979	Elongation factor 1-alpha, putative, expressed
LOC_Os03g08070	Os.26448.1.A1_at	11/11	3	+	4099099..4106050	copper-translocating P-type ATPase family protein, expressed
LOC_Os03g08080	Os.27944.1.S1_at	10/11	3	+	4108770..4110263	YGGT family protein, expressed
LOC_Os03g08090	Os.50444.1.S1_at	11/11	3	+	4110245..4111661	hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os03g08100	Os.14134.1.S1_at	10/11	3	+	4112575..4115607	hydrolase, alpha/beta fold family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.3170.1.S1_at--854--1057	1	Chr03:4088909..4088933 (25 bp)	TTCTACTTCAGCCTTGCGGCGCAGC	LOC_Os03g08040
OsAffx.3170.1.S1_at--644--1081	1	Chr03:4088767..4088791 (25 bp)	TTGTCCCTACCCTCGCAATGGAATG	LOC_Os03g08040
OsAffx.3170.1.S1_at--1119--319	1	Chr03:4088752..4088776 (25 bp)	CAATGGAATGGCACGAAGCGCTTGG	LOC_Os03g08040
OsAffx.3170.1.S1_at--186--149	1	Chr03:4088614..4088638 (25 bp)	AGCAAGGATCCGGCGAGGACGACTA	LOC_Os03g08040
OsAffx.3170.1.S1_at--141--203	1	Chr03:4088593..4088617 (25 bp)	ACTACGGTGGTAGTGTCGTCCCTGA	LOC_Os03g08040
OsAffx.3170.1.S1_at--571--693	1	Chr03:4088584..4088608 (25 bp)	GTAGTGTCGTCCCTGACGCCGGCTT	LOC_Os03g08040
OsAffx.3170.1.S1_at--1002--625	11	Chr12:749817..749836 (20 bp)	GATGGTGGTGACTTTGTCAATCTCA	NONE
OsAffx.3170.1.S1_at--472--737	19	Chr11:14056982..14057309 (25 bp)	GTGACTTTGTCAATCTCAAGAATTT	NONE
OsAffx.3170.1.S1_at--847--435	1	Chr03:4086911..4086935 (25 bp)	CCAGAATGAAGGAGTCGGACGCCGA	LOC_Os03g08040
OsAffx.3170.1.S1_at--466--893	1	Chr03:4086886..4086910 (25 bp)	TGACCCCCTCAAGCTATACAAAATG	LOC_Os03g08040
OsAffx.3170.1.S1_at--409--615	1	Chr03:4086859..4086883 (25 bp)	GTTAACCCGACTATCAAAGAAGACT	LOC_Os03g08040

Target Sequence

TTCTACTTCAGCCTTGCGGCGCAGCCACCGCCGACCCCTCCGAGCGCGCCTCCTTCATGCGCCAGCCAGCCACACCGCCT
CTTCTTCTTCCTCCGCACAGTGCAGCCGCCGCCATCCCCTCCGAGCACCACCGCAACCGTCGTTGTCCCTACCCTCGCAA
TGGAATGGCACGAAGCGCTTGGCGGCACCGGGTCTGCCTCACCGCCCCTGCCGCGGAGATCGAGGAGGTCCGGGTTAGCC
GGATTGAAGATGGCGAGGGCGGCGTCGACGGCGAGCAGGTGGAGGGCGTCGGCAGAGCAAGGATCCGGCGAGGACGACTA
CGGTGGTAGTGTCGTCCCTGACGCCGGCTTCCTTGGTGGCGGGAGAGATGGTGGTGACTTTGTCAATCTCAAGAATTTGC
TGGCCCAGTATTCGAAGATGCTCATAGGGGTAAGGGAACCTTCACCGGAGAAGAAGTCGACGAGGACATCCATGGCAGAA
GCAACCAGAATGAAGGAGTCGGACGCCGATGACCCCCTCAAGCTATACAAAATGGGGTTAACCCGACTATCAAAGAAGAC
T

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis