Browse Element(s) Details


Os.50444.1.S1_at

Description gb:AK121217.1
DB_XREF= gi:37990840
TID=Os.50444.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090C05, full insert sequence.
FL= gb:AK121217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0809011/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08040OsAffx.3170.1.S1_at11/113+4086826..4089008hypothetical protein
LOC_Os03g08050Os.12625.1.S1_a_at11/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.1.S1_x_at6/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.4.S1_x_at5/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.2.S1_x_at5/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.6.S1_x_at4/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.57463.1.S1_x_at3/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.1.S1_a_at11/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.1.S1_x_at9/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.4.S1_x_at8/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.6.S1_x_at7/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.2.S1_x_at5/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.57463.1.S1_x_at3/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08070Os.26448.1.A1_at11/113+4099099..4106050copper-translocating P-type ATPase family protein, expressed
LOC_Os03g08080Os.27944.1.S1_at10/113+4108770..4110263YGGT family protein, expressed
LOC_Os03g08090Os.50444.1.S1_at11/113+4110245..4111661hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os03g08100Os.14134.1.S1_at10/113+4112575..4115607hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08110Os.48498.1.S1_at11/113+4116077..4121832hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08120OsAffx.15367.1.S1_at1/113+4124340..4127243retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g08130OsAffx.25014.1.S1_at11/113+4127938..4129282hypothetical protein
LOC_Os03g08140Os.7286.1.S1_at11/113+4129867..4136536Tubulin-tyrosine ligase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50444.1.S1_at--252--7491Chr03:4110759..4110783 (25 bp)
GTGGGCACGGATGCATTCCAGCTTA
LOC_Os03g08090
Os.50444.1.S1_at--997--1551Chr03:4110740..4110764 (25 bp)
AGCTTACACCATTGGCTCAGGATGT
LOC_Os03g08090
Os.50444.1.S1_at--942--5991Chr03:4110701..4110725 (25 bp)
GAGACCATGATCAGATATTCCCCTT
LOC_Os03g08090
Os.50444.1.S1_at--38--3791Chr03:4110619..4110643 (25 bp)
CTGCAGATTAACCTTTTTCCTTGTG
LOC_Os03g08090
Os.50444.1.S1_at--399--6671Chr03:4110585..4110609 (25 bp)
GTTGCAGCTGCTTGGGAGATCATGT
LOC_Os03g08090
Os.50444.1.S1_at--1102--1391Chr03:4110540..4110564 (25 bp)
AGACAGGCCACGTGCCTCAAATGGA
LOC_Os03g08090
Os.50444.1.S1_at--947--8331Chr03:4110519..4110543 (25 bp)
TGGAGGACCCGGATCGGTTCAACAA
LOC_Os03g08090
Os.50444.1.S1_at--1125--6611Chr03:4110488..4110512 (25 bp)
GTTGGACTTCTTGCTTGGATCTCAA
LOC_Os03g08090
Os.50444.1.S1_at--1067--7871Chr03:4110463..4110487 (25 bp)
GGTTCCCCTTCAAACGAGCATTAGA
LOC_Os03g08090
Os.50444.1.S1_at--103--1571Chr03:4110413..4110437 (25 bp)
AGCTTTGCAGAAAACCCATGACCCT
LOC_Os03g08090
Os.50444.1.S1_at--408--2291Chr03:4110274..4110298 (25 bp)
AAATGCTTCGTGTACTGCTGTGATG
LOC_Os03g08090
Target Sequence 
GTGGGCACGGATGCATTCCAGCTTACACCATTGGCTCAGGATGTATTGCTTATCTGGGGAGACCATGATCAGATATTCCC
CTTGGATAAGGCATTTGCTGTCAAGAGGTAAAATAATTCACAGCAATACAAAATTTGCAACTGCAGATTAACCTTTTTCC
TTGTGCTTATGACGGTTGCAGCTGCTTGGGAGATCATGTTAGATTGGAGATCATCAAGAAGACAGGCCACGTGCCTCAAA
TGGAGGACCCGGATCGGTTCAACAAGATCGTGTTGGACTTCTTGCTTGGATCTCAAGGTTCCCCTTCAAACGAGCATTAG
ATACATATGGTCGACTGGTTTGATTCAGCTTTGCAGAAAACCCATGACCCTTAAAAATACAAGAAAAGAATTTTGGGGGG
GAGGGGCACGCTTGAAGTGTGATGTACGATGTTAATAGCCTAATAACAACTCCAAAATCAAATTCACTGGATGCATACAG
AATAAAAATGCTTCGTGTACTGCTGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis