Browse Element(s) Details


OsAffx.25014.1.S1_at

Description tigr:9631.m00749
TID=OsAffx.25014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0813011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08070Os.26448.1.A1_at11/113+4099099..4106050copper-translocating P-type ATPase family protein, expressed
LOC_Os03g08080Os.27944.1.S1_at10/113+4108770..4110263YGGT family protein, expressed
LOC_Os03g08090Os.50444.1.S1_at11/113+4110245..4111661hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os03g08100Os.14134.1.S1_at10/113+4112575..4115607hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08110Os.48498.1.S1_at11/113+4116077..4121832hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08120OsAffx.15367.1.S1_at1/113+4124340..4127243retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g08130OsAffx.25014.1.S1_at11/113+4127938..4129282hypothetical protein
LOC_Os03g08140Os.7286.1.S1_at11/113+4129867..4136536Tubulin-tyrosine ligase family protein, expressed
LOC_Os03g08150OsAffx.12776.1.S1_at11/113+4136722..4137464Cupin family protein, expressed
LOC_Os03g08160OsAffx.3171.1.S1_at11/113+4140669..4144127hypothetical protein
LOC_Os03g08160Os.7286.1.S1_at1/113+4140669..4144127hypothetical protein
LOC_Os03g08170Os.20885.1.S1_at11/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08170OsAffx.30714.1.S1_x_at1/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25014.1.S1_at--439--2511Chr03:4128655..4128679 (25 bp)
AACATACTCTATGACTGGGACTTAG
LOC_Os03g08130
OsAffx.25014.1.S1_at--149--8651Chr03:4128640..4128664 (25 bp)
TGGGACTTAGAACCACCCTGCAAAG
LOC_Os03g08130
OsAffx.25014.1.S1_at--329--7911Chr03:4128491..4128515 (25 bp)
GGTTCCTGATCCAAGTCACTATGAG
LOC_Os03g08130
OsAffx.25014.1.S1_at--961--7391Chr03:4128328..4128352 (25 bp)
GTGATGATGGCTCTTAACCTTCAAA
LOC_Os03g08130
OsAffx.25014.1.S1_at--367--8191Chr03:4128293..4128317 (25 bp)
GGAAGCGCTTGCACTATATGGTCCT
LOC_Os03g08130
OsAffx.25014.1.S1_at--559--5831Chr03:4128243..4128267 (25 bp)
GACCTTGTACGCTGTCAAAGTATTT
LOC_Os03g08130
OsAffx.25014.1.S1_at--825--1131Chr03:4128054..4128074 (21 bp)
AGTCCAGGTTCTTTTCGTGATTGGA
LOC_Os03g08130
OsAffx.25014.1.S1_at--302--2871Chr03:4128029..4128053 (25 bp)
AAGTGAATGATCTTCCACGGGCCAT
LOC_Os03g08130
OsAffx.25014.1.S1_at--668--8431Chr03:4128010..4128034 (25 bp)
GGCCATTTCTAAACCTGTTCCGCAA
LOC_Os03g08130
OsAffx.25014.1.S1_at--663--2631Chr03:4127987..4128011 (25 bp)
AACCTATTAGCATGCGGCCCTGGCG
LOC_Os03g08130
OsAffx.25014.1.S1_at--1077--3911Chr03:4127968..4127992 (25 bp)
CTGGCGCACTGATCTTGGTGGCAGC
LOC_Os03g08130
Target Sequence 
AACATACTCTATGACTGGGACTTAGAACCACCCTGCAAAGAAGATGCTCCTGATCCTGATATCTGGCTTAAAAGCTTTGT
TGGTTGGAGGACAGTGATATGGGATAGGATGGTTTATGGGAATTGTTGGAATAAGGTTTGCAAGGCTAGTTATGATGAGA
TCATGGTTCCTGATCCAAGTCACTATGAGATGTTAAGTGAATTAGGAGATGGCAGTGCTGGAAACCTGGTATTGATGAAT
TTGAGTACTGATTCCCCCACATTAAGTATTGGTGGTGATAATGTGGTTCATATGAGTTCCATTGTCAAATTGGACCGTGG
AAGATCAGTGATGATGGCTCTTAACCTTCAAAGGAAGACAGTGGAAGCGCTTGCACTATATGGTCCTGAAAGAAAGACCT
GCCACCCATACAGACCTTGTACGCTGTCAAAGTATTTGAAGATAAGTCCAGGTTCTTTTCGTGATTGGAAAGTGAATGAT
CTTCCACGGGCCATTTCTAAACCTGTTCCGCAACCTATTAGCATGCGGCCCTGGCGCACTGATCTTGGTGGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis