Browse Element(s) Details


OsAffx.30714.1.S1_x_at

Description tigr:9638.m03492
TID=OsAffx.30714.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3880011/11Leucine Rich Repeat family protein, expressed
LOC_Os03g081701/11serine/threonine-protein kinase NAK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38720Os.46825.1.S1_at11/1110+20299403..20300301Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730OsAffx.20172.1.S1_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730OsAffx.20172.1.S1_x_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.4762.1.S1_at11/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.46634.1.S1_x_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.149.1.S1_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38750OsAffx.20171.1.S1_at11/1110+20309753..20312847transposon protein, putative, Mutator sub-class
LOC_Os10g38760OsAffx.30713.1.S1_x_at9/1110+20313372..20313827hypothetical protein
LOC_Os10g38760OsAffx.30713.1.S1_at6/1110+20313372..20313827hypothetical protein
LOC_Os10g38770OsAffx.18570.1.S1_at11/1110+20314720..20315200GRF zinc finger family protein
LOC_Os10g38780Os.9101.1.S1_at11/1110+20316247..20317266glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38790OsAffx.18571.1.S1_at10/1110+20317401..20318318hypothetical protein
LOC_Os10g38800OsAffx.30714.1.S1_x_at11/1110+20322783..20325191Leucine Rich Repeat family protein, expressed
LOC_Os10g38820Os.46836.1.S1_at9/1110+20331077..20333627bZIP transcription factor family protein, expressed
LOC_Os10g38834Os.46875.1.S1_at11/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38834Os.52782.1.S1_at1/1110+20342115..20348558no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30714.1.S1_x_at--584--1731Chr10:20323249..20323273 (25 bp)
ACCATGACTGCAAACCTCAGGTACT
LOC_Os10g38800
OsAffx.30714.1.S1_x_at--659--3831Chr10:20323196..20323220 (25 bp)
CTGCTGGACAACGAGCACGAAGCGA
LOC_Os10g38800
OsAffx.30714.1.S1_x_at--607--5091Chr10:20323182..20323206 (25 bp)
GCACGAAGCGAAGCTCTCAGATTTC
LOC_Os10g38800
OsAffx.30714.1.S1_x_at--199--5412Chr03:4156851..4156871 (21 bp)
GAAGCTCTCAGATTTCGGGCTATCC
LOC_Os03g08170
OsAffx.30714.1.S1_x_at--905--3711Chr10:20323100..20323124 (25 bp)
CTAGCGTCGTCGTCGATGAGCTCGA
LOC_Os10g38800
OsAffx.30714.1.S1_x_at--1065--4591Chr10:20323066..20323090 (25 bp)
GCGACAAGTGCGACGTGTTCAGCTT
LOC_Os10g38800
OsAffx.30714.1.S1_x_at--869--1371Chr10:20322928..20322952 (25 bp)
AGAGCGGCACGGTCTCAGGCTGCTT
LOC_Os10g38800
OsAffx.30714.1.S1_x_at--315--4991Chr10:20322895..20322919 (25 bp)
GCATGAGGAGATTCGTCGAGGCTGA
LOC_Os10g38800
OsAffx.30714.1.S1_x_at--421--92Chr10:20322885..20322909 (25 bp)
ATTCGTCGAGGCTGAGCTGGTGCAG
LOC_Os10g38800
OsAffx.30714.1.S1_x_at--651--8611Chr10:20322868..20322892 (25 bp)
TGGTGCAGGTGCTGAAGCTGGGCCT
LOC_Os10g38800
OsAffx.30714.1.S1_x_at--1060--1611Chr10:20322853..20322877 (25 bp)
AGCTGGGCCTCGTGTGCACCTCCGA
LOC_Os10g38800
Target Sequence 
ACCATGACTGCAAACCTCAGGTACTTCACCTCAACATCAAATCAAGAAACATCCTGCTGGACAACGAGCACGAAGCGAAG
CTCTCAGATTTCGGGCTATCCAAGCTTCTGCCCGAACCGAGCAACCTACCAGGCTACGTGGCGCCGGAGCTAGCGTCGTC
GTCGATGAGCTCGAGGCACGGCGGCGACAAGTGCGACGTGTTCAGCTTCGGGGTGGTGTTGCTGGAGATGGTGACGGGGC
GGAAGCCGGTGAGCAGCCGCCATGGACGGCAGGGCACGGTGTTGGTGGTGGTCCTGCGCGACTACGTGAGGGAGATGGTG
GAGAGCGGCACGGTCTCAGGCTGCTTCGACCTGAGCATGAGGAGATTCGTCGAGGCTGAGCTGGTGCAGGTGCTGAAGCT
GGGCCTCGTGTGCACCTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30714.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis