Browse Element(s) Details


OsAffx.20171.1.S1_at

Description gb:NM_197501.1
DB_XREF= gi:37536361
TID=OsAffx.20171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposon protein (OSJNBb0038A07.22), mRNA.
PROD=putative transposon protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3875011/11transposon protein, putative, Mutator sub-class
LOC_Os05g373202/11transposon protein, putative, Mutator sub-class
LOC_Os08g135802/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38690OsAffx.18569.1.S1_x_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.18569.1.S1_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.22609.1.S1_x_at1/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38700Os.14444.1.S1_at11/1110+20289681..20290839glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.9775.1.S1_at11/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.46635.1.S1_x_at1/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38720Os.46825.1.S1_at11/1110+20299403..20300301Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730OsAffx.20172.1.S1_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730OsAffx.20172.1.S1_x_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.4762.1.S1_at11/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.46634.1.S1_x_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.149.1.S1_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38750OsAffx.20171.1.S1_at11/1110+20309753..20312847transposon protein, putative, Mutator sub-class
LOC_Os10g38760OsAffx.30713.1.S1_x_at9/1110+20313372..20313827hypothetical protein
LOC_Os10g38760OsAffx.30713.1.S1_at6/1110+20313372..20313827hypothetical protein
LOC_Os10g38770OsAffx.18570.1.S1_at11/1110+20314720..20315200GRF zinc finger family protein
LOC_Os10g38780Os.9101.1.S1_at11/1110+20316247..20317266glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38790OsAffx.18571.1.S1_at10/1110+20317401..20318318hypothetical protein
LOC_Os10g38800OsAffx.30714.1.S1_x_at11/1110+20322783..20325191Leucine Rich Repeat family protein, expressed
LOC_Os10g38820Os.46836.1.S1_at9/1110+20331077..20333627bZIP transcription factor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20171.1.S1_at--344--1071Chr10:20312275..20312299 (25 bp)
AGGGACCTTGGATATAAACTGTACT
LOC_Os10g38750
OsAffx.20171.1.S1_at--84--351Chr10:20312288..20312312 (25 bp)
ATAAACTGTACTCAGCCCACAAGCA
LOC_Os10g38750
OsAffx.20171.1.S1_at--832--8231Chr10:20312329..20312353 (25 bp)
GGCACTGGTAGGGACTTGAAGACAT
LOC_Os10g38750
OsAffx.20171.1.S1_at--571--833Chr10:20312352..20312376 (25 bp)
ATGGAGGCACACTGTTGACTTGAAC
LOC_Os10g38750
OsAffx.20171.1.S1_at--1051--2471Chr10:20312409..20312433 (25 bp)
AACAGGCATACCTTGCACACATGTA
LOC_Os10g38750
OsAffx.20171.1.S1_at--1038--5771Chr10:20312482..20312506 (25 bp)
GACGAGTACTACTATGTTGCAGCAT
LOC_Os10g38750
OsAffx.20171.1.S1_at--674--6693Chr10:20312533..20312557 (25 bp)
GTTCCAATGACAGACAAGGCCCAAT
LOC_Os10g38750
OsAffx.20171.1.S1_at--835--8991Chr10:20312579..20312603 (25 bp)
TGAAGTTACATCCACCTCTGTTGAA
LOC_Os10g38750
OsAffx.20171.1.S1_at--750--10871Chr10:20312699..20312723 (25 bp)
TTGGCCACACCAAGAAAACCTGTAA
LOC_Os10g38750
OsAffx.20171.1.S1_at--781--8911Chr10:20312724..20312748 (25 bp)
TGAGCCAGTTCATGACCCAAATGCC
LOC_Os10g38750
OsAffx.20171.1.S1_at--162--2751Chr10:20312788..20312812 (25 bp)
AAGAAAGTTGTTCTATCTGTGCAAG
LOC_Os10g38750
Target Sequence 
AGGGACCTTGGATATAAACTGTACTCAGCCCACAAGCACCTAGGGGAGATAGGTGGCACTGGTAGGGACTTGAAGACATG
GAGGCACACTGTTGACTTGAACACTAGAGAATGTAGTTGTAGGCAATGGCAGATAACAGGCATACCTTGCACACATGTAA
TTTTTCTGATCATTTCAAGGAGGGGGCTTGAATTGGAACAATTTGTTGACGAGTACTACTATGTTGCAGCATTCAAGAGG
GCATATGCTGGTCATGTGGTTCCAATGACAGACAAGGCCCAATGGGCTAAGGGTAATATTGGATTGAAGTTACATCCACC
TCTGTTGAAGAGGTCAGCTGGTAGACCTAGAAGCAGAAGGATTAAGGGGGTGGAAGAAGGTGGAGTAGGGAAAAGAAAGT
ACAGATGCAAGAGGTGTGGTCAATTTGGCCACACCAAGAAAACCTGTAATGAGCCAGTTCATGACCCAAATGCCCCACCA
CCAGCCCCACCAAAGCCCAAAAGGAAAAGAGTGAAGAAAGTTGTTCTATCTGTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis