Browse Element(s) Details


Os.149.1.S1_at

Description gb:D10861.1
DB_XREF= gi:287398
TID=Os.149.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for chilling tolerance related protein, complete cds, clone:pBC591
DEF=Oryza sativa (japonica cultivar-group) mRNA for chilling tolerance related protein, complete cds, clone:pBC591.
FL= gb:D10861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g387401/11glutathione S-transferase GSTU6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38664NANA10+20279232..20279933expressed protein
LOC_Os10g38670Os.21842.1.S1_at11/1110+20280396..20281652glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38680OsAffx.27523.1.S1_x_at11/1110+20282048..20283534hypothetical protein
LOC_Os10g38680OsAffx.27523.3.S1_x_at1/1110+20282048..20283534hypothetical protein
LOC_Os10g38690OsAffx.18569.1.S1_x_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.18569.1.S1_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.22609.1.S1_x_at1/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38700Os.14444.1.S1_at11/1110+20289681..20290839glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.9775.1.S1_at11/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.46635.1.S1_x_at1/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38720Os.46825.1.S1_at11/1110+20299403..20300301Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730OsAffx.20172.1.S1_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730OsAffx.20172.1.S1_x_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.4762.1.S1_at11/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.46634.1.S1_x_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.149.1.S1_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38750OsAffx.20171.1.S1_at11/1110+20309753..20312847transposon protein, putative, Mutator sub-class
LOC_Os10g38760OsAffx.30713.1.S1_x_at9/1110+20313372..20313827hypothetical protein
LOC_Os10g38760OsAffx.30713.1.S1_at6/1110+20313372..20313827hypothetical protein
LOC_Os10g38770OsAffx.18570.1.S1_at11/1110+20314720..20315200GRF zinc finger family protein
LOC_Os10g38780Os.9101.1.S1_at11/1110+20316247..20317266glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38790OsAffx.18571.1.S1_at10/1110+20317401..20318318hypothetical protein
LOC_Os10g38800OsAffx.30714.1.S1_x_at11/1110+20322783..20325191Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.149.1.S1_at--398--3991NONE
CGTGGAGACCGTAGAGGGCGCGTTC
NONE
Os.149.1.S1_at--548--6731NONE
GTTCTTCGCGCGACGGCGTGGGTTC
NONE
Os.149.1.S1_at--878--4611NONE
GCGAGGACGTCATCTCTGGCCGCGT
NONE
Os.149.1.S1_at--322--7491NONE
GTGGGAGGAGCGTTCCACTCACCGA
NONE
Os.149.1.S1_at--936--8011NONE
GGAGGAGCGTTCCACTCACCGACTA
NONE
Os.149.1.S1_at--70--10691NONE
TTCCACTCACCGACTACAGTGTGTA
NONE
Os.149.1.S1_at--684--3731NONE
CTACAGTGTGTAGACGTGCCGATGA
NONE
Os.149.1.S1_at--862--1091NONE
AGTGTGTAGACGTGCCGATGACTGC
NONE
Os.149.1.S1_at--649--9071NONE
TGCTCGTTCAGCAGACCTCAACCGA
NONE
Os.149.1.S1_at--760--4031NONE
CGTTCAGCAGACCTCAACCGACTGT
NONE
Os.149.1.S1_at--468--3251Chr10:20305009..20305029 (21 bp)
CAACCGACTGTTTTCGCCATGGTGA
LOC_Os10g38740
Target Sequence 
CGTGGAGACCGTAGAGGGCGCGTTCGGGGAGTGCTCCAAGGGGAAGCCGTTCTTCGCGCGACGGCGTGGGTTCGTCGACG
TCGTCGTGCTCGGCGGCTACCTCGGGTGGTTCACGGCGATCGACAAGCTGATCGTCGCAGGCTGATTGACCCGGCGAGGA
CGTCATCTCTGGCCGCGTGGGAGGAGCGTTCCACTCACCGACTACAGTGTGTAGACGTGCCGATGACTGCCGACAAGCTG
CTCGTTCAGCAGACCTCAACCGACTGTTTTCGCCATGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis