Browse Element(s) Details


OsAffx.27523.1.S1_x_at

Description gb:NM_197494.1
DB_XREF= gi:37536347
TID=OsAffx.27523.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0034L04.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3868011/11hypothetical protein
LOC_Os06g090301/11hypothetical protein
LOC_Os02g146101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38570NANA10+20257542..20258111transposon protein, putative, unclassified
LOC_Os10g38580Os.5053.1.S1_at11/1110+20260075..20261169glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38590Os.15699.1.S1_at8/1110+20262829..20263917glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38590Os.40000.1.S1_x_at1/1110+20262829..20263917glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38600Os.40000.1.S1_at11/1110+20265385..20266432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38600Os.40000.1.S1_x_at11/1110+20265385..20266432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610Os.8868.1.S1_at11/1110+20267390..20268697glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610Os.40000.1.S1_x_at3/1110+20267390..20268697glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630Os.7732.1.S1_at10/1110+20270215..20272232glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630OsAffx.5632.1.S1_x_at2/1110+20270215..20272232glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630OsAffx.5632.1.S1_at2/1110+20270215..20272232glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38640NANA10+20274076..20274906glutathione S-transferase GSTU6, putative
LOC_Os10g38660NANA10+20277801..20278597glutathione S-transferase GSTU6, putative
LOC_Os10g38664NANA10+20279232..20279933expressed protein
LOC_Os10g38670Os.21842.1.S1_at11/1110+20280396..20281652glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38680OsAffx.27523.1.S1_x_at11/1110+20282048..20283534hypothetical protein
LOC_Os10g38680OsAffx.27523.3.S1_x_at1/1110+20282048..20283534hypothetical protein
LOC_Os10g38690OsAffx.18569.1.S1_x_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.18569.1.S1_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.22609.1.S1_x_at1/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38700Os.14444.1.S1_at11/1110+20289681..20290839glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.9775.1.S1_at11/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.46635.1.S1_x_at1/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38720Os.46825.1.S1_at11/1110+20299403..20300301Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730OsAffx.20172.1.S1_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730OsAffx.20172.1.S1_x_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.4762.1.S1_at11/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.46634.1.S1_x_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.149.1.S1_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27523.1.S1_x_at--167--9576Chr11:26950137..26950161 (25 bp)
TTTATAGATGGAGAAGAGGCGGTTT
NONE
OsAffx.27523.1.S1_x_at--760--4613Chr10:20283068..20283092 (25 bp)
GCGAGCTGGCGGTCACGGGCGCAAG
LOC_Os10g38680
OsAffx.27523.1.S1_x_at--440--3992Chr10:20283053..20283077 (25 bp)
CGGGCGCAAGTGACCAGGCGGCGAT
LOC_Os10g38680
OsAffx.27523.1.S1_x_at--834--893Chr10:20282917..20282941 (25 bp)
AGGCGCTCTGTCTCGGTTTTGGAAG
LOC_Os10g38680
OsAffx.27523.1.S1_x_at--1132--3331Chr10:20282892..20282916 (25 bp)
CACGCGGCGTGGAGTAGTGGGACCA
LOC_Os10g38680
OsAffx.27523.1.S1_x_at--343--1652Chr10:20282846..20282870 (25 bp)
AGCGACCAGGCGACTGGCCACGCGT
LOC_Os10g38680
OsAffx.27523.1.S1_x_at--572--1914Chr08:22157101..22157125 (25 bp)
ACGGGCGGCGGCGAAAATCGAATGG
NONE
OsAffx.27523.1.S1_x_at--60--3291Chr10:20282734..20282758 (25 bp)
CAAAGCGGCGGTGGTTGACCGGCGA
LOC_Os10g38680
OsAffx.27523.1.S1_x_at--954--2771Chr10:20282673..20282697 (25 bp)
AAGAGAGACGACGTTCTCTCGGGCG
LOC_Os10g38680
OsAffx.27523.1.S1_x_at--363--9512Chr10:20282657..20282681 (25 bp)
TCTCGGGCGGCGCACATGCATTGCA
LOC_Os10g38680
OsAffx.27523.1.S1_x_at--731--2091Chr10:20282352..20282668 (25 bp)
ACATGCATTGCACTTGGATTTCGAG
LOC_Os10g38680
Target Sequence 
TTTATAGATGGAGAAGAGGCGGTTTGGGAGGGGGAACNGACANAGGGCGGTCAAGGGTGCAAGGACCGCGAGCTGGCGGT
CACGGGCGCAAGTGACCAGGCGGCGATAGGGCATGGCGGTGGTGGTCAGGGGAAAAAGCAGAAAAGGGAGGGAAAAAGGG
GAGCTCTGCTCCTTGCCGATTTGGGCGAGCAGAGGAAGGAGGGGAGAGCGCGTGAGAGAGGCGCTCTGTCTCGGTTTTGG
AAGCACGCGGCGTGGAGTAGTGGGACCAGGCGGCAGCGCGGGCACGGGCAGCGACCAGGCGACTGGCCACGCGTGAGCGC
GCGTGCGCGGGAAACCGACGGGCGGCGGCGAAAATCGAATGGCGGCGGCGGGAGGGTTCAAACCGCGGCGGCGGGAATCG
GCAAAGCGGCGGTGGTTGACCGGCGAGAGAGAGAAATCGAGCGAGAGAGAGAGAGAGAGAGGAAGAGAGACGACGTTCTC
TCGGGCGGCGCACATGCATTGCACTTGGATTTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27523.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis