Browse Element(s) Details

Os.21842.1.S1_at

Description

gb:AK107032.1
DB_XREF= gi:32992241
TID=Os.21842.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase (OSJNBb0038A07.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B04, full insert sequence.
FL= gb:AK107032.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g38670	11/11	glutathione S-transferase GSTU6, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g38570	NA	NA	10	+	20257542..20258111	transposon protein, putative, unclassified
LOC_Os10g38580	Os.5053.1.S1_at	11/11	10	+	20260075..20261169	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38590	Os.15699.1.S1_at	8/11	10	+	20262829..20263917	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38590	Os.40000.1.S1_x_at	1/11	10	+	20262829..20263917	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38600	Os.40000.1.S1_at	11/11	10	+	20265385..20266432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38600	Os.40000.1.S1_x_at	11/11	10	+	20265385..20266432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610	Os.8868.1.S1_at	11/11	10	+	20267390..20268697	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610	Os.40000.1.S1_x_at	3/11	10	+	20267390..20268697	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	Os.7732.1.S1_at	10/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	OsAffx.5632.1.S1_x_at	2/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	OsAffx.5632.1.S1_at	2/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38640	NA	NA	10	+	20274076..20274906	glutathione S-transferase GSTU6, putative
LOC_Os10g38660	NA	NA	10	+	20277801..20278597	glutathione S-transferase GSTU6, putative
LOC_Os10g38664	NA	NA	10	+	20279232..20279933	expressed protein
LOC_Os10g38670	Os.21842.1.S1_at	11/11	10	+	20280396..20281652	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38680	OsAffx.27523.1.S1_x_at	11/11	10	+	20282048..20283534	hypothetical protein
LOC_Os10g38680	OsAffx.27523.3.S1_x_at	1/11	10	+	20282048..20283534	hypothetical protein
LOC_Os10g38690	OsAffx.18569.1.S1_x_at	11/11	10	+	20287129..20287900	glutathione S-transferase GSTU6, putative
LOC_Os10g38690	OsAffx.18569.1.S1_at	11/11	10	+	20287129..20287900	glutathione S-transferase GSTU6, putative
LOC_Os10g38690	OsAffx.22609.1.S1_x_at	1/11	10	+	20287129..20287900	glutathione S-transferase GSTU6, putative
LOC_Os10g38700	Os.14444.1.S1_at	11/11	10	+	20289681..20290839	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710	Os.9775.1.S1_at	11/11	10	+	20292769..20293826	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710	Os.46635.1.S1_x_at	1/11	10	+	20292769..20293826	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38720	Os.46825.1.S1_at	11/11	10	+	20299403..20300301	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730	OsAffx.20172.1.S1_at	11/11	10	+	20301464..20302195	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730	OsAffx.20172.1.S1_x_at	11/11	10	+	20301464..20302195	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740	Os.4762.1.S1_at	11/11	10	+	20304207..20305257	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740	Os.46634.1.S1_x_at	1/11	10	+	20304207..20305257	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740	Os.149.1.S1_at	1/11	10	+	20304207..20305257	glutathione S-transferase GSTU6, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009407	biological_process	toxin catabolism
GO:0005737	cellular_component	cytoplasm
GO:0004364	molecular_function	glutathione transferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.21842.1.S1_at--279--473	1	Chr10:20281122..20281146 (25 bp)	GCTGTCCGGCATCAAGCTGTTCGAT	LOC_Os10g38670
Os.21842.1.S1_at--439--123	1	Chr10:20281223..20281247 (25 bp)	AGTTCGGCAGGCTGATCGAGTATGC	LOC_Os10g38670
Os.21842.1.S1_at--152--967	1	Chr10:20281304..20281328 (25 bp)	TCACCAACCAACTGCGATGAGCTGA	LOC_Os10g38670
Os.21842.1.S1_at--884--199	1	Chr10:20281333..20281357 (25 bp)	ACTCGCCCCTGCAAGTGTCGATTTG	LOC_Os10g38670
Os.21842.1.S1_at--752--1083	1	Chr10:20281377..20281401 (25 bp)	TTGTGTCCTGTTTGTGTCAAGTGTC	LOC_Os10g38670
Os.21842.1.S1_at--1152--707	1	Chr10:20281392..20281416 (25 bp)	GTCAAGTGTCAACTGCTTCATTGTT	LOC_Os10g38670
Os.21842.1.S1_at--1003--1069	1	Chr10:20281437..20281461 (25 bp)	TTGCGCAACTTGTTCCATGCCAGTG	LOC_Os10g38670
Os.21842.1.S1_at--234--919	1	Chr10:20281454..20281478 (25 bp)	TGCCAGTGTTTTGTTCAGTCAGTCT	LOC_Os10g38670
Os.21842.1.S1_at--310--965	1	Chr10:20281468..20281492 (25 bp)	TCAGTCAGTCTGTCGTTGTTCCATG	LOC_Os10g38670
Os.21842.1.S1_at--402--939	1	Chr10:20281480..20281504 (25 bp)	TCGTTGTTCCATGTCGTGTTTGTTT	LOC_Os10g38670
Os.21842.1.S1_at--360--163	2	Chr10:20281624..20281648 (25 bp)	AGCGGCGAAGAAGTGCCCTGACCAA	LOC_Os10g38670

Target Sequence

GCTGTCCGGCATCAAGCTGTTCGATCCCGCCAAGACGCCGCTTCTGGCGGCCTGGGCGGAGCGCTTCCTCGCGCTGGACG
CGGCGAAGGCGTCCATGCCGGAGTTCGGCAGGCTGATCGAGTATGCCAAGATGAGGCAGGCCGAGTCTGACGCCGCGAAC
GCAGCAGCCAACTGATCACCACTCACCAACCAACTGCGATGAGCTGAGCAGACTCGCCCCTGCAAGTGTCGATTTGGGGA
AAGCGAGTTAATAATTTGTGTCCTGTTTGTGTCAAGTGTCAACTGCTTCATTGTTGCTCTGCNCCTCTGCCTACGTTGCG
CAACTTGTTCCATGCCAGTGTTTTGTTCAGTCAGTCTGTCGTTGTTCCATGTCGTGTTTGTTTATGACCAATAAATATAT
TTGTATCCTTTTATTTTAAAAAACGCACAGACATTATATATCCTTGTAAAACAATACATGCCAAAAAATATGAAATTTGA
ACAAAGTTTTATTTTCTTGGTCAGCGGCGAAGAAGTGCCCTGACCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis