Browse Element(s) Details


OsAffx.27523.3.S1_x_at

Description gb:NM_196769.1
DB_XREF= gi:37534897
TID=OsAffx.27523.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0068N06.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3131011/11transposon protein, putative, unclassified
LOC_Os05g267404/11retrotransposon protein, putative, unclassified
LOC_Os02g067503/11retrotransposon protein, putative, unclassified
LOC_Os10g386801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31280OsAffx.18472.1.S1_at11/1110+16077908..16078688hypothetical protein
LOC_Os10g31290Os.46672.1.S1_at11/1110+16079569..16086346expressed protein
LOC_Os10g31300OsAffx.27523.2.S1_at11/1110+16088727..16090054hypothetical protein
LOC_Os10g31310OsAffx.27523.3.S1_x_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.3.S1_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.4.S1_at3/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31320Os.51176.1.S1_at11/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31320Os.11040.1.S1_x_at10/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51848.1.S1_x_at11/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51929.1.S1_at9/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31340NANA10+16108759..16109793hypothetical protein
LOC_Os10g31350OsAffx.8061.1.S1_at10/1110+16115851..16118858transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27523.3.S1_x_at--662--7152Chr10:16093338..16093362 (25 bp)
GTCTACGCGTGTTCGAGAGGCTAGC
LOC_Os10g31310
OsAffx.27523.3.S1_x_at--331--2571Chr10:16093410..16093434 (25 bp)
AACGGAAGGCTATCGCGTCAGGACG
LOC_Os10g31310
OsAffx.27523.3.S1_x_at--364--7191Chr10:16093579..16093940 (25 bp)
GTCGGCAGCTGCAACGCGGTTGATA
LOC_Os10g31310
OsAffx.27523.3.S1_x_at--249--4131Chr10:16093933..16093954 (22 bp)
CGCGGTTGATAAATGGCACGCCCCT
LOC_Os10g31310
OsAffx.27523.3.S1_x_at--472--5632Chr10:16094000..16094024 (25 bp)
GACACAGGAGTTTCAGCTGCTGGAA
LOC_Os10g31310
OsAffx.27523.3.S1_x_at--727--4771Chr10:16094015..16094039 (25 bp)
GCTGCTGGAATCATCATTACGGACT
LOC_Os10g31310
OsAffx.27523.3.S1_x_at--248--7871Chr10:16094045..16094069 (25 bp)
GGTTTAGTGCTGTTTGCTGCGCAAA
LOC_Os10g31310
OsAffx.27523.3.S1_x_at--1066--2532Chr10:16094071..16094095 (25 bp)
AACTCTGAAATCCTGTGCTACTGCT
LOC_Os10g31310
OsAffx.27523.3.S1_x_at--260--9093Chr10:16094086..16094110 (25 bp)
TGCTACTGCTGTCCAAGCTGAGGCA
LOC_Os10g31310
OsAffx.27523.3.S1_x_at--563--1613Chr10:16094101..16094125 (25 bp)
AGCTGAGGCATTGGCATGTCTAGAA
LOC_Os10g31310
OsAffx.27523.3.S1_x_at--224--2092Chr10:16094181..16094205 (25 bp)
ACATAGAGGTGTTCAAGGCTCTGTC
LOC_Os10g31310
Target Sequence 
GTCTACGCGTGTTCGAGAGGCTAGCCGAGCTACCACGCGAGCTGGAGGTGGCGAGAGAGAGCGAGGAAGGGGAACGGAAG
GCTATCGCGTCAGGACGGGCGCTGGGAGATGGCCAACGGCGCAGGGCGGGCTCTCCGGCCTCGGGCCAGGGAAGGGGAAG
AAGGAGGGTGCCCGGAGTCCTCTTCGGCTCCTCGCGCGCACGCCGGCTTCACCAGCACGTGCGGCGGCGAAGGGAGGCGA
GGTCGGCAGCTGCAACGCGGTTGATAAATGGCACGCCCCTCCCGAAGGTTCAGCAAAGGTAAATGTGGATGCTGGTTTTA
TAGAAGACACAGGAGTTTCAGCTGCTGGAATCATCATTACGGACTGCAGGGGTTTAGTGCTGTTTGCTGCGCAAAAAACT
CTGAAATCCTGTGCTACTGCTGTCCAAGCTGAGGCATTGGCATGTCTAGAAGGATTAAGGGCAGCCATGGAATGGATTCA
TATGCCAATAATCTTGGAAACTGACAACATAGAGGTGTTCAAGGCTCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27523.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis