Browse Element(s) Details


Os.11040.1.S1_x_at

Description gb:AK070851.1
DB_XREF= gi:32980874
TID=Os.11040.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065B06, full insert sequence.
FL= gb:AK070851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3132010/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g138901/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31280OsAffx.18472.1.S1_at11/1110+16077908..16078688hypothetical protein
LOC_Os10g31290Os.46672.1.S1_at11/1110+16079569..16086346expressed protein
LOC_Os10g31300OsAffx.27523.2.S1_at11/1110+16088727..16090054hypothetical protein
LOC_Os10g31310OsAffx.27523.3.S1_x_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.3.S1_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.4.S1_at3/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31320Os.51176.1.S1_at11/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31320Os.11040.1.S1_x_at10/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51848.1.S1_x_at11/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51929.1.S1_at9/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31340NANA10+16108759..16109793hypothetical protein
LOC_Os10g31350OsAffx.8061.1.S1_at10/1110+16115851..16118858transposon protein, putative, Mutator sub-class
LOC_Os10g31360Os.48030.1.A1_at11/1110+16120211..16120921GRF zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11040.1.S1_x_at--800--6231Chr10:16097468..16097492 (25 bp)
GATGGCTACCACCAAGCATTTTGTG
LOC_Os10g31320
Os.11040.1.S1_x_at--569--7411Chr10:16097446..16097470 (25 bp)
GTGTTGCTAATAATCCTTGTCCTCC
LOC_Os10g31320
Os.11040.1.S1_x_at--389--2031Chr10:16097404..16097428 (25 bp)
ACTAGTGCTAGAACTCTCTTGGGTT
LOC_Os10g31320
Os.11040.1.S1_x_at--21--1632Chr12:7871877..7871899 (23 bp)
AGCGGCTCAGGCTATGGATCTGGCA
LOC_Os12g13890
Os.11040.1.S1_x_at--627--3911Chr10:16096848..16096872 (25 bp)
CTGGCTCTGGCTACGGGTATGGATC
LOC_Os10g31320
Os.11040.1.S1_x_at--830--2011Chr10:16096806..16096830 (25 bp)
ACTACTAGTCCTATACTCGGCAATG
LOC_Os10g31320
Os.11040.1.S1_x_at--369--2951Chr10:16096785..16096809 (25 bp)
AATGGAGCAATTCTACCGTGGGACT
LOC_Os10g31320
Os.11040.1.S1_x_at--639--1751Chr10:16096771..16096795 (25 bp)
ACCGTGGGACTTGTGCACTCATATA
LOC_Os10g31320
Os.11040.1.S1_x_at--777--3011Chr10:16096693..16096717 (25 bp)
AATGCTTCTTGATTGGGCTTGCTGC
LOC_Os10g31320
Os.11040.1.S1_x_at--17--10731Chr10:16096675..16096699 (25 bp)
TTGCTGCTGCCCAATATATGCGCTT
LOC_Os10g31320
Os.11040.1.S1_x_at--31--2271Chr10:16096613..16096637 (25 bp)
AAATACTTATGCATTTGTTCTCTTA
NONE
Target Sequence 
GATGGCTACCACCAAGCATTTTGTGTTGCTAATAATCCTTGTCCTCCTTAGCATAGGAATGACCACTAGTGCTAGAACTC
TCTTGGGTTATGGCATTGGAGGAGAAGGTGGCGGTGGTNGANNNGGNGGTGGTNNCGNCGGCGGTCAAGGTGGTGGGTAT
GGTAGCGGCTCAGGCTATGGATCTGGCAGCGGATATGGTCAAGGTGGCGGTGCTTATGGTGGAGGATATGGAAGCGGTGG
TGGTGGTGGAGGCGGCGGCGGCCAAGGCGGAGGATCTGGCTATGGTTCTGGCTCTGGCTACGGGTATGGATCCGGAGGAG
GTGGTGGGCACTACTAGTCCTATACTCGGCAATGGAGCAATTCTACCGTGGGACTTGTGCACTCATATATGATGATTGTG
TAACATTGGTATATACACAAGCTTGTTTTCGTGATTATATGTAATGCTTCTTGATTGGGCTTGCTGCTGCCCAATATATG
CGCTTCCCAAGTATAAATAAATCAAAAATAAGGTTGAAATACAAATACTTATGCATTTGTTCTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11040.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis