Browse Element(s) Details


Os.48030.1.A1_at

Description gb:CR278584
DB_XREF= gi:44665150
DB_XREF=CR278584
CLONE=p712f03p3
TID=Os.48030.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0068N06.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3136011/11GRF zinc finger family protein, expressed
LOC_Os08g3598010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31320Os.51176.1.S1_at11/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31320Os.11040.1.S1_x_at10/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51848.1.S1_x_at11/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51929.1.S1_at9/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31340NANA10+16108759..16109793hypothetical protein
LOC_Os10g31350OsAffx.8061.1.S1_at10/1110+16115851..16118858transposon protein, putative, Mutator sub-class
LOC_Os10g31360Os.48030.1.A1_at11/1110+16120211..16120921GRF zinc finger family protein, expressed
LOC_Os10g31370OsAffx.18474.1.S1_at11/1110+16124617..16125688hypothetical protein
LOC_Os10g31380OsAffx.8060.1.S1_at11/1110+16127154..16127808hypothetical protein
LOC_Os10g31390NANA10+16135436..16136398retrotransposon protein, putative, unclassified
LOC_Os10g31400OsAffx.20293.1.S1_at10/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31400Os.26999.2.A1_at3/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48030.1.A1_at--954--932Chr10:16120855..16120879 (25 bp)
AGGCAACCGTATGGCTCGCCTATTC
LOC_Os10g31360
Os.48030.1.A1_at--385--10152Chr10:16120828..16120852 (25 bp)
TATCGCGTTGGTCCGTTCGAGTACG
LOC_Os10g31360
Os.48030.1.A1_at--470--10632Chr10:16120813..16120837 (25 bp)
TTCGAGTACGAACCAGCGGTGCTGT
LOC_Os10g31360
Os.48030.1.A1_at--909--1052Chr10:16120765..16120789 (25 bp)
AGGTGGATATCTTGGAGCGTCGACA
LOC_Os10g31360
Os.48030.1.A1_at--987--7172Chr10:16120731..16120755 (25 bp)
GTCGGTATTTCAAGTGCCGCAATGC
LOC_Os10g31360
Os.48030.1.A1_at--1027--7572Chr10:16120617..16120641 (25 bp)
GGGCTGCGATTTTTATGCTTGGCAT
LOC_Os10g31360
Os.48030.1.A1_at--901--10132Chr10:16120604..16120628 (25 bp)
TATGCTTGGCATGATGGCCCGACAA
LOC_Os10g31360
Os.48030.1.A1_at--990--851Chr10:16120591..16120615 (25 bp)
ATGGCCCGACAAGCAGCTTTCTGAG
LOC_Os10g31360
Os.48030.1.A1_at--807--8692Chr10:16120344..16120368 (25 bp)
TGTGCTCATTTGGTGCATCCTGTCA
LOC_Os10g31360
Os.48030.1.A1_at--699--7332Chr10:16120332..16120356 (25 bp)
GTGCATCCTGTCATGTATGTGTGTT
LOC_Os10g31360
Os.48030.1.A1_at--560--6792Chr10:16120307..16120331 (25 bp)
GTTATTCTATTAGTGCTGGGCAAGA
LOC_Os10g31360
Target Sequence 
AGGCAACCGTATGGCTCGCCTATTCCCTATCGCGTTGGTCCGTTCGAGTACGAACCAGCGGTGCTGTGTCGGTGCGAACT
GAAGGCGGCGAGGTGGATATCTTGGAGCGTCGACAACNCTGGTCGTCGGTATTTCAAGTGCCGCAATGCTCGGAAAGGGG
GCTGCGATTTTTATGCTTGGCATGATGGCCCGACAAGCAGCTTTCTGAGGGAGGTGTTGAATGATTTGCNAGGTGCTGTG
CATTCTCTNAGGAGGGAGAAGGCAGATGCAGTGAAGGAGGTTGAGGAACTTCGTGTGAAGTCTGAAGAGCAATGCAGGGA
GTTTGCTTCAGTTGGGAGGGAGTTGGCTTCAGTGAGGGAGTTGGTTAGTGAGTTGGATGTGAAAAATGCTGTTTTAATTG
ATAGCAAATNNNNGNNNNAGAANNNNCGAACTGTGCTCATTTGGTGCATCCTGTCATGTATGTGTGTTGTTATTCTATTA
GTGCTGGGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48030.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis