Browse Element(s) Details


OsAffx.8060.1.S1_at

Description tigr:9638.m02711
TID=OsAffx.8060.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3138011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31340NANA10+16108759..16109793hypothetical protein
LOC_Os10g31350OsAffx.8061.1.S1_at10/1110+16115851..16118858transposon protein, putative, Mutator sub-class
LOC_Os10g31360Os.48030.1.A1_at11/1110+16120211..16120921GRF zinc finger family protein, expressed
LOC_Os10g31370OsAffx.18474.1.S1_at11/1110+16124617..16125688hypothetical protein
LOC_Os10g31380OsAffx.8060.1.S1_at11/1110+16127154..16127808hypothetical protein
LOC_Os10g31390NANA10+16135436..16136398retrotransposon protein, putative, unclassified
LOC_Os10g31400OsAffx.20293.1.S1_at10/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31400Os.26999.2.A1_at3/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31420Os.54325.1.S1_at11/1110+16146756..16147689transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31440Os.46900.1.S1_at11/1110+16151686..16152722transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8060.1.S1_at--53--10571Chr10:16127754..16127778 (25 bp)
TTCTTCGTGCTACTAAGTATTGGAG
LOC_Os10g31380
OsAffx.8060.1.S1_at--1084--6851Chr10:16127738..16127762 (25 bp)
GTATTGGAGTATCCAATGCGAGGAT
LOC_Os10g31380
OsAffx.8060.1.S1_at--832--10191Chr10:16127534..16127558 (25 bp)
TATTATGGACCATATGGACCTTACT
LOC_Os10g31380
OsAffx.8060.1.S1_at--310--3571Chr10:16127524..16127548 (25 bp)
CATATGGACCTTACTATGGACCTTA
LOC_Os10g31380
OsAffx.8060.1.S1_at--388--3691Chr10:16127499..16127523 (25 bp)
CTACGGACCTTACTATGGACCTTAT
LOC_Os10g31380
OsAffx.8060.1.S1_at--1095--3691Chr10:16127487..16127511 (25 bp)
CTATGGACCTTATGCTAGTGGCGGA
LOC_Os10g31380
OsAffx.8060.1.S1_at--13--1751Chr10:16127481..16127505 (25 bp)
ACCTTATGCTAGTGGCGGAGCAGCT
LOC_Os10g31380
OsAffx.8060.1.S1_at--1095--7471Chr10:16127380..16127404 (25 bp)
GTGGGCCTTATTATGGACCTTATGC
LOC_Os10g31380
OsAffx.8060.1.S1_at--1162--4431Chr10:16127376..16127400 (25 bp)
GCCTTATTATGGACCTTATGCTAGC
LOC_Os10g31380
OsAffx.8060.1.S1_at--1063--7551Chr10:16127270..16127294 (25 bp)
GGGCCATATTATGGACCTTATGCTA
LOC_Os10g31380
OsAffx.8060.1.S1_at--1105--5831Chr10:16127209..16127233 (25 bp)
GAGCGGTCCAGGTGGTAGTGGCTAC
LOC_Os10g31380
Target Sequence 
TTCTTCGTGCTACTAAGTATTGGAGTATCCAATGCGAGGATGGGGGTGGTGGTGGGGGCGGAGGCGGAGGCGGTGGAGGC
AGGTGGTGGCGGTGGCGGTGGAGGTGGTGGAGGTGGTTATTATGGACCATATGGACCTTACTATGGACCTTACTACGGAC
CTTACTATGGACCTTATGCTAGTGGCGGAGCAGCTGCGAGTGGTGGTGGCGGCGGTGGTGGTGGAGGCGGTGGGTATGGT
TATGGTGCTGGCGGGGGATATGGTCAAGCTGGTGGGCCTTATTATGGACCTTATGCTAGCGGTGGTGGTGGCGGCGGTGC
AGGTGGCGGTGGAGGCGGCGGGTATGGTTATGGTGCTGGCGGTGGATATGGTCAAGCTGGTGGGCCATATTATGGACCTT
ATGCTAGCGGCGCGGTGGTGGTGGCGGCGGAGGAGGTGGTGGGAGCGGTCCAGGTGGTAGTGGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis