Browse Element(s) Details


Os.46900.1.S1_at

Description gb:AK102661.1
DB_XREF= gi:32987870
TID=Os.46900.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycine-rich protein (OSJNBa0068N06.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101I22, full insert sequence.
FL= gb:AK064070.1 gb:AK102661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3144011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31380OsAffx.8060.1.S1_at11/1110+16127154..16127808hypothetical protein
LOC_Os10g31390NANA10+16135436..16136398retrotransposon protein, putative, unclassified
LOC_Os10g31400OsAffx.20293.1.S1_at10/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31400Os.26999.2.A1_at3/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31420Os.54325.1.S1_at11/1110+16146756..16147689transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31440Os.46900.1.S1_at11/1110+16151686..16152722transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31460Os.23194.1.S1_at10/1110+16156932..16157770expressed protein
LOC_Os10g31470Os.46671.1.S1_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31470Os.46671.1.S1_x_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31480Os.50536.1.S1_at11/1110+16164903..16165848expressed protein
LOC_Os10g31480Os.51848.1.S1_x_at1/1110+16164903..16165848expressed protein
LOC_Os10g31490NANA10+16168531..16169088transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31500OsAffx.121.1.S1_s_at11/1110+16171271..16172350transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46900.1.S1_at--1001--8591Chr10:16152244..16152268 (25 bp)
TGGTCAGGCTGGTAGCTATGGCCCC
LOC_Os10g31440
Os.46900.1.S1_at--100--10011Chr10:16152232..16152256 (25 bp)
TAGCTATGGCCCCGGTGGAGCTTAT
LOC_Os10g31440
Os.46900.1.S1_at--730--1191Chr10:16152053..16152077 (25 bp)
AGTATGGCGGGTCTGGGCATGGTTC
LOC_Os10g31440
Os.46900.1.S1_at--151--4391Chr10:16151900..16151924 (25 bp)
GCCAAGCTGGTGGATACGGGCCTTA
LOC_Os10g31440
Os.46900.1.S1_at--32--6471Chr10:16151888..16151912 (25 bp)
GATACGGGCCTTACGGTGGAGGATA
LOC_Os10g31440
Os.46900.1.S1_at--27--251Chr10:16151807..16151831 (25 bp)
ATATAGTGAACAACTGCATTTTATG
LOC_Os10g31440
Os.46900.1.S1_at--69--2131Chr10:16151777..16151801 (25 bp)
AAATAATATCAAAGAGGCCCTTGTT
LOC_Os10g31440
Os.46900.1.S1_at--649--6111Chr10:16151764..16151788 (25 bp)
GAGGCCCTTGTTATGTGGTAACCGA
LOC_Os10g31440
Os.46900.1.S1_at--894--2011Chr10:16151711..16151735 (25 bp)
ACTACTATGTAATGTTACTGGTGCA
LOC_Os10g31440
Os.46900.1.S1_at--1020--9911Chr10:16151696..16151720 (25 bp)
TACTGGTGCAATGAATAACCTCTTG
LOC_Os10g31440
Os.46900.1.S1_at--479--3191Chr10:16151688..16151712 (25 bp)
CAATGAATAACCTCTTGCCTTATGC
LOC_Os10g31440
Target Sequence 
TGGTCAGGCTGGTAGCTATGGCCCCGGTGGAGCTTATGCTCAAGGAGGTGGACAAGGTGGAGGTGGCGGTGGTGGACAAA
ATGGAGGGTCTGGGTATGGTTCTGGCTCTGGCTATGGCCAAGCTGGTAGTTATGGCCCAGGTGGAGCATATGCTCAAGGA
GGTGGACAAGGTGGAGGTGGCGGCGGTGGACAGTATGGCGGGTCTGGGCATGGTTCTGGCTCTGGCTATGGCCAAGCTGG
TAGTTATGGCCCAGGTGGAGCATATGCTCAAGGAGGTGGACAAGGTGGAGGTGGTGGCGGTGGACAATACGGCGGGTCTG
GTTCTGGCTCTGGATCTGGTTCTGGCCAAGCTGGTGGATACGGGCCTTACGGTGGAGGATATGCTCAGGCAGGCGGTCAA
GGCGGCGGTGGCGGGGGTGGGCATCCATAGAACTNCTATATAGTGAACAACTGCATTTTATGCAGTTAAATAATATCAAA
GAGGCCCTTGTTATGTGGTAACCGATAATAGAATAAAAGTAGTGGTAATGTAAACTACTATGTAATGTTACTGGTGCAAT
GAATAACCTCTTGCCTTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis