Browse Element(s) Details


Os.26999.2.A1_at

Description gb:CB632425
DB_XREF= gi:29627414
DB_XREF=OSIIEb10K11.r
CLONE=OSIIEb10K11
TID=Os.26999.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26999 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g314003/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31350OsAffx.8061.1.S1_at10/1110+16115851..16118858transposon protein, putative, Mutator sub-class
LOC_Os10g31360Os.48030.1.A1_at11/1110+16120211..16120921GRF zinc finger family protein, expressed
LOC_Os10g31370OsAffx.18474.1.S1_at11/1110+16124617..16125688hypothetical protein
LOC_Os10g31380OsAffx.8060.1.S1_at11/1110+16127154..16127808hypothetical protein
LOC_Os10g31390NANA10+16135436..16136398retrotransposon protein, putative, unclassified
LOC_Os10g31400OsAffx.20293.1.S1_at10/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31400Os.26999.2.A1_at3/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31420Os.54325.1.S1_at11/1110+16146756..16147689transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31440Os.46900.1.S1_at11/1110+16151686..16152722transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31460Os.23194.1.S1_at10/1110+16156932..16157770expressed protein
LOC_Os10g31470Os.46671.1.S1_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31470Os.46671.1.S1_x_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26999.2.A1_at--174--2834Chr12:14512879..14512902 (24 bp)
AAGTTCCAAGTCTTGTCCTGGATGG
NONE
Os.26999.2.A1_at--25--8212Chr10:16138054..16138078 (25 bp)
GGAAGTGCATCGTCATTGCTTTATT
LOC_Os10g31400
Os.26999.2.A1_at--221--10572Chr10:16138010..16138034 (25 bp)
TTCTATTTTCAAAGCCAGGGCCATT
LOC_Os10g31400
Os.26999.2.A1_at--647--2891Chr05:4044351..4044375 (25 bp)
AATGGTTCAATTATTCCCGGTCACG
NONE
Os.26999.2.A1_at--68--693Chr12:14513074..14513098 (25 bp)
ATGAGTTTTGGTTCACCTCGTTGCC
NONE
Os.26999.2.A1_at--689--2335Chr12:14513108..14513132 (25 bp)
AAAGATTCAACCCAGTGCAGCAAGT
NONE
Os.26999.2.A1_at--320--2774Chr12:14513147..14513171 (25 bp)
AAGAGCCAGCTGCAAGGCGTCAGCA
NONE
Os.26999.2.A1_at--952--6074Chr12:14513172..14513196 (25 bp)
GAGTAACACTGATCCCAAGTTGTCT
NONE
Os.26999.2.A1_at--265--6174Chr12:14513221..14513245 (25 bp)
GAGGCCAGGTCAACCGTTTGGCTTA
NONE
Os.26999.2.A1_at--834--2834Chr12:14513249..14513273 (25 bp)
AAGTAGCATCAGGAACAGCCGCAAT
NONE
Os.26999.2.A1_at--533--2834Chr12:14513342..14513366 (25 bp)
AAGTCATTGTCTGTGGGTTACGGAA
NONE
Target Sequence 
AAGTTCCAAGTCTTGTCCTGGATGGAAGTGCATCGTCATTGCTTTATTTTGATTGATCGTTGAAGTTTTCTATTTTCAAA
GCCAGGGCCATTCGTAAATTCGAGAAGTGTCGATTTTTCTTCAAGGACAATGGTTCAATTATTCCCGGTCACGCGAAAGT
ATGACTACTCTCTGTAAGGGGGGTAGGTCGCAGAGATGAGTTTTGGTTCACCTCGTTGCCGTTTCCCTTAAAGATTCAAC
CCAGTGCAGCAAGTTGGTTAGTACTTGAAAGAGCCAGCTGCAAGGCGTCAGCAGAGTAACACTGATCCCAAGTTGTCTAA
TTAAATTCGAAGGTACGCCGGTGAGGCCAGGTCAACCGTTTGGCTTAAAGAAGTAGCATCAGGAACAGCCGCAATCCAGA
CAAGGACAGACCAAGCCAGTTTCCTGAAAATACTTGTGGTTTGAATCAAGAGCAAGTCGAGCAAAGTCATTGTCTGTGGG
TTACGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26999.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis