Browse Element(s) Details


OsAffx.18474.1.S1_at

Description tigr:9638.m02710
TID=OsAffx.18474.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3137011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31330Os.51848.1.S1_x_at11/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51929.1.S1_at9/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31340NANA10+16108759..16109793hypothetical protein
LOC_Os10g31350OsAffx.8061.1.S1_at10/1110+16115851..16118858transposon protein, putative, Mutator sub-class
LOC_Os10g31360Os.48030.1.A1_at11/1110+16120211..16120921GRF zinc finger family protein, expressed
LOC_Os10g31370OsAffx.18474.1.S1_at11/1110+16124617..16125688hypothetical protein
LOC_Os10g31380OsAffx.8060.1.S1_at11/1110+16127154..16127808hypothetical protein
LOC_Os10g31390NANA10+16135436..16136398retrotransposon protein, putative, unclassified
LOC_Os10g31400OsAffx.20293.1.S1_at10/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31400Os.26999.2.A1_at3/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31420Os.54325.1.S1_at11/1110+16146756..16147689transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18474.1.S1_at--587--6091Chr10:16125346..16125370 (25 bp)
GAGTCTGTGGCATCTGGGCCTTCTA
LOC_Os10g31370
OsAffx.18474.1.S1_at--123--491Chr10:16125335..16125359 (25 bp)
ATCTGGGCCTTCTAGCGGGCAATAT
LOC_Os10g31370
OsAffx.18474.1.S1_at--598--2491Chr10:16125145..16125169 (25 bp)
AACAGAGAATCAGGGTATGGTGCAG
LOC_Os10g31370
OsAffx.18474.1.S1_at--794--7171Chr10:16125119..16125143 (25 bp)
GTCTGGCTCGGGTTATGGTGAAACT
LOC_Os10g31370
OsAffx.18474.1.S1_at--306--10871Chr10:16125093..16125117 (25 bp)
TTGGCTTTGGTGGTGCATCATTTGC
LOC_Os10g31370
OsAffx.18474.1.S1_at--271--9051Chr10:16125080..16125104 (25 bp)
TGCATCATTTGCACACGGTGGTGGT
LOC_Os10g31370
OsAffx.18474.1.S1_at--28--2111Chr10:16125029..16125053 (25 bp)
ACATGATGGGTTTGGTTCTAGTTCT
LOC_Os10g31370
OsAffx.18474.1.S1_at--1112--10031Chr10:16125011..16125035 (25 bp)
TAGTTCTGGTTTGGGCTCTAGGTAT
LOC_Os10g31370
OsAffx.18474.1.S1_at--600--7471Chr10:16124792..16124816 (25 bp)
GTGGGTACGGTGGACCTAATAGATT
LOC_Os10g31370
OsAffx.18474.1.S1_at--733--8511Chr10:16124767..16124791 (25 bp)
TGGACATGGATTTGGTTCCGGCGTT
LOC_Os10g31370
OsAffx.18474.1.S1_at--953--7371Chr10:16124735..16124759 (25 bp)
GTGAGGCTGGTAATCAATACGGTGA
LOC_Os10g31370
Target Sequence 
GAGTCTGTGGCATCTGGGCCTTCTAGCGGGCAATATGCTAGTGGAGGTGGAAAGGGTGGGGGCGGTGGCGGAGGGCGGAA
TGGAGGATTTGGTTATTGTTTGGGGTCTGGTTCTGGAAATAGTGAAGGGAAGAAATACAAACCTTATGATGGAGGGTATT
CTATGGGAAGCGGTGGTGGCAAAGGTGGGGGTGGTGGGACAAACAGAGAATCAGGGTATGGTGCAGGGTCTGGCTCGGGT
TATGGTGAAACTATTGGCTTTGGTGGTGCATCATTTGCACACGGTGGTGGTGGTGGCAAAGGCGGAGGTGGTGGACAACA
TGATGGGTTTGGTTCTAGTTCTGGTTTGGGCTCTAGGTATGGGAGTGGAGGTGGTGGTGGGTACGGTGGACCTAATAGAT
TTGGACATGGATTTGGTTCCGGCGTTGGTATAGGTGAGGCTGGTAATCAATACGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis