Browse Element(s) Details


OsAffx.20293.1.S1_at

Description gb:NM_196778.1
DB_XREF= gi:37534915
TID=OsAffx.20293.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0068N06.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3140010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g322101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31350OsAffx.8061.1.S1_at10/1110+16115851..16118858transposon protein, putative, Mutator sub-class
LOC_Os10g31360Os.48030.1.A1_at11/1110+16120211..16120921GRF zinc finger family protein, expressed
LOC_Os10g31370OsAffx.18474.1.S1_at11/1110+16124617..16125688hypothetical protein
LOC_Os10g31380OsAffx.8060.1.S1_at11/1110+16127154..16127808hypothetical protein
LOC_Os10g31390NANA10+16135436..16136398retrotransposon protein, putative, unclassified
LOC_Os10g31400OsAffx.20293.1.S1_at10/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31400Os.26999.2.A1_at3/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31420Os.54325.1.S1_at11/1110+16146756..16147689transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31440Os.46900.1.S1_at11/1110+16151686..16152722transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31460Os.23194.1.S1_at10/1110+16156932..16157770expressed protein
LOC_Os10g31470Os.46671.1.S1_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31470Os.46671.1.S1_x_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20293.1.S1_at--967--10091Chr05:4044411..4044805 (25 bp)
TATGGTTTACAAGCCAGGGCCATTC
NONE
OsAffx.20293.1.S1_at--330--1431Chr10:16137954..16137978 (25 bp)
AGAACAACAGTTCAAAGGTCCTCAG
LOC_Os10g31400
OsAffx.20293.1.S1_at--391--2291Chr10:16137941..16137965 (25 bp)
AAAGGTCCTCAGTCAGGCGAAAGTA
LOC_Os10g31400
OsAffx.20293.1.S1_at--1062--76315Chr12:2496458..2496482 (25 bp)
GGCGAAAGTAAGACTACCCACTGTA
NONE
OsAffx.20293.1.S1_at--22--11Chr10:16137910..16137934 (25 bp)
CCCACTGTAAGGAGGGTAGGTCTCA
LOC_Os10g31400
OsAffx.20293.1.S1_at--403--1031Chr10:16137893..16137917 (25 bp)
AGGTCTCAGAGATGACTTTTGGCTT
LOC_Os10g31400
OsAffx.20293.1.S1_at--640--6031Chr10:16137885..16137909 (25 bp)
GAGATGACTTTTGGCTTACCTCGTC
LOC_Os10g31400
OsAffx.20293.1.S1_at--570--104511Chr12:2496514..2496538 (25 bp)
TTACCTCGTCGGCATTTCACTTGAA
NONE
OsAffx.20293.1.S1_at--466--71911Chr12:2496521..2496545 (25 bp)
GTCGGCATTTCACTTGAATGTTCAA
NONE
OsAffx.20293.1.S1_at--1107--5271Chr10:16137848..16137872 (25 bp)
GAATGTTCAACCCAGTGTAGCAATT
LOC_Os10g31400
OsAffx.20293.1.S1_at--1015--4171Chr10:16137838..16137862 (25 bp)
CCCAGTGTAGCAATTTGGTTAGTAA
LOC_Os10g31400
Target Sequence 
TATGGTTTACAAGCCAGGGCCATTCGTAAATTCGAGAAGTGTCGATTTTTCTTCAAGAACAACAGTTCAAAGGTCCTCAG
TCAGGCGAAAGTAAGACTACCCACTGTAAGGAGGGTAGGTCTCAGAGATGACTTTTGGCTTACCTCGTCGGCATTTCACT
TGAATGTTCAACCCAGTGTAGCAATTTGGTTAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis