Browse Element(s) Details


Os.46671.1.S1_x_at

Description gb:NM_196785.1
DB_XREF= gi:37534929
TID=Os.46671.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46671 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative glycine-rich protein (OSJNBa0068N06.34), mRNA.
PROD=putative glycine-rich protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3147011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31400OsAffx.20293.1.S1_at10/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31400Os.26999.2.A1_at3/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31420Os.54325.1.S1_at11/1110+16146756..16147689transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31440Os.46900.1.S1_at11/1110+16151686..16152722transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31460Os.23194.1.S1_at10/1110+16156932..16157770expressed protein
LOC_Os10g31470Os.46671.1.S1_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31470Os.46671.1.S1_x_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31480Os.50536.1.S1_at11/1110+16164903..16165848expressed protein
LOC_Os10g31480Os.51848.1.S1_x_at1/1110+16164903..16165848expressed protein
LOC_Os10g31490NANA10+16168531..16169088transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31500OsAffx.121.1.S1_s_at11/1110+16171271..16172350transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31510OsAffx.6829.1.S1_at11/1110+16178272..16178850hypothetical protein
LOC_Os10g31520Os.13981.1.S1_at11/1110+16179695..16183455Ribosomal RNA assembly protein mis3, putative, expressed
LOC_Os10g31530Os.18711.1.S1_at11/1110+16186452..16187321expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46671.1.S1_x_at--214--4351Chr10:16162385..16162409 (25 bp)
CCAGGCGGGCGGTGATGGATCATAT
LOC_Os10g31470
Os.46671.1.S1_x_at--198--431Chr10:16162367..16162391 (25 bp)
ATCATATGCTAGTGGAGGTGGAGAA
LOC_Os10g31470
Os.46671.1.S1_x_at--848--5991Chr10:16162323..16162347 (25 bp)
GAGAGAATGGTGGTTCCGGATATGG
LOC_Os10g31470
Os.46671.1.S1_x_at--238--3251Chr10:16162273..16162297 (25 bp)
CAAGCTGGTGGGTCTGGACCATATG
LOC_Os10g31470
Os.46671.1.S1_x_at--1023--3911Chr10:16162172..16162196 (25 bp)
CGGCTCTGGTTCAGGGTACGGTCAA
LOC_Os10g31470
Os.46671.1.S1_x_at--180--9691Chr10:16162151..16162175 (25 bp)
TCAAGCCGGAGGGTATGGACCGTAT
LOC_Os10g31470
Os.46671.1.S1_x_at--200--1791Chr10:16162133..16162157 (25 bp)
ACCGTATGGCGGTGGATATGCTCAG
LOC_Os10g31470
Os.46671.1.S1_x_at--602--10131Chr10:16162117..16162141 (25 bp)
TATGCTCAGGCTGGTGGCCAAGGTG
LOC_Os10g31470
Os.46671.1.S1_x_at--698--9431Chr10:16162027..16162051 (25 bp)
TCGGGAAGTGCCTACGGTGGACATC
LOC_Os10g31470
Os.46671.1.S1_x_at--185--5331Chr10:16162023..16162047 (25 bp)
GAAGTGCCTACGGTGGACATCCATA
LOC_Os10g31470
Os.46671.1.S1_x_at--652--4451Chr10:16162018..16162042 (25 bp)
GCCTACGGTGGACATCCATAGAAGT
LOC_Os10g31470
Target Sequence 
CCAGGCGGGCGGTGATGGATCATATGCTAGTGGAGGTGGAGAAGGAGGCGGTGGAGGCGGTGGAGAGAATGGTGGTTCCG
GATATGGTTCCGGTTCTGGGTCTGGGTATGGGCAAGCTGGTGGGTCTGGACCATATGGTGGTGGGTATGCTCAGGGAGGA
GGTGGTGGCCAGGGTGGCGGTGGTGGACAAAATGGTGGATCTGGATATGGTTCCGGCTCTGGTTCAGGGTACGGTCAAGC
CGGAGGGTATGGACCGTATGGCGGTGGATATGCTCAGGCTGGTGGCCAAGGTGGCGGCGGCGGTGGTGGACAGAGTGGTC
CAGGCGGCAGNGGATATGGTAGTGGCTCAGGNAGTNGTTCGGGAAGTGCCTACGGTGGACATCCATAGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46671.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis