Browse Element(s) Details


OsAffx.121.1.S1_s_at

Description gb:NM_196788.1
DB_XREF= gi:37534935
TID=OsAffx.121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative glycine-rich protein (OSJNBa0068N06.3), mRNA.
PROD=putative glycine-rich protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3150011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31420Os.54325.1.S1_at11/1110+16146756..16147689transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31440Os.46900.1.S1_at11/1110+16151686..16152722transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31460Os.23194.1.S1_at10/1110+16156932..16157770expressed protein
LOC_Os10g31470Os.46671.1.S1_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31470Os.46671.1.S1_x_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31480Os.50536.1.S1_at11/1110+16164903..16165848expressed protein
LOC_Os10g31480Os.51848.1.S1_x_at1/1110+16164903..16165848expressed protein
LOC_Os10g31490NANA10+16168531..16169088transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31500OsAffx.121.1.S1_s_at11/1110+16171271..16172350transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31510OsAffx.6829.1.S1_at11/1110+16178272..16178850hypothetical protein
LOC_Os10g31520Os.13981.1.S1_at11/1110+16179695..16183455Ribosomal RNA assembly protein mis3, putative, expressed
LOC_Os10g31530Os.18711.1.S1_at11/1110+16186452..16187321expressed protein
LOC_Os10g31540OsAffx.18476.1.S1_at11/1110+16189643..16190224expressed protein
LOC_Os10g31550OsAffx.18477.1.S1_at11/1110+16193108..16193527hypothetical protein
LOC_Os10g31550Os.53910.1.S1_at1/1110+16193108..16193527hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.121.1.S1_s_at--581--551Chr10:16171544..16171568 (25 bp)
ATCCGGATCCGGTAGCGGCGGATAC
LOC_Os10g31500
OsAffx.121.1.S1_s_at--959--6951Chr10:16171533..16171557 (25 bp)
GTAGCGGCGGATACCATTGAAATTT
LOC_Os10g31500
OsAffx.121.1.S1_s_at--452--10651Chr10:16171510..16171534 (25 bp)
TTCCGGTAGGTTTTCGCTTGTCGCG
LOC_Os10g31500
OsAffx.121.1.S1_s_at--756--10551Chr10:16171493..16171517 (25 bp)
TTGTCGCGGGAAACCCTAGAGCCGG
LOC_Os10g31500
OsAffx.121.1.S1_s_at--640--6171Chr10:16171469..16171493 (25 bp)
GAGGAGGCCGAGACAATGCATGAAT
LOC_Os10g31500
OsAffx.121.1.S1_s_at--208--5211Chr10:16171448..16171472 (25 bp)
GAATTGGTCTCGTCATTTTATGCTG
LOC_Os10g31500
OsAffx.121.1.S1_s_at--781--7131Chr10:16171437..16171461 (25 bp)
GTCATTTTATGCTGTCCGACAAGAA
LOC_Os10g31500
OsAffx.121.1.S1_s_at--687--9771Chr10:16171357..16171381 (25 bp)
TAATGGGCTCCATCATTGTAATGGA
LOC_Os10g31500
OsAffx.121.1.S1_s_at--203--851Chr10:16171337..16171361 (25 bp)
ATGGAAGATGCATGGTAGCCCAGCA
LOC_Os10g31500
OsAffx.121.1.S1_s_at--303--6971Chr10:16171323..16171347 (25 bp)
GTAGCCCAGCATGCGGAAATGAGAT
LOC_Os10g31500
OsAffx.121.1.S1_s_at--210--6271Chr10:16171301..16171325 (25 bp)
GATGTGATGACACTCTACAAGAGCA
LOC_Os10g31500
Target Sequence 
ATCCGGATCCGGTAGCGGCGGATACCATTGAAATTTCCGGTAGGTTTTCGCTTGTCGCGGGAAACCCTAGAGCCGGAGGA
GGCCGAGACAATGCATGAATTGGTCTCGTCATTTTATGCTGTCCGACAAGAAGTTTAATTTCTAGGGTTTGTACTTGGGT
TTTAATTAGGCAGTTTTTCTTAATAATTAATGGGCTCCATCATTGTAATGGAAGATGCATGGTAGCCCAGCATGCGGAAA
TGAGATGTGATGACACTCTACAAGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.121.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis