Browse Element(s) Details


Os.54325.1.S1_at

Description gb:AK103350.1
DB_XREF= gi:32988559
TID=Os.54325.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126I04, full insert sequence.
FL= gb:AK103350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3142011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31370OsAffx.18474.1.S1_at11/1110+16124617..16125688hypothetical protein
LOC_Os10g31380OsAffx.8060.1.S1_at11/1110+16127154..16127808hypothetical protein
LOC_Os10g31390NANA10+16135436..16136398retrotransposon protein, putative, unclassified
LOC_Os10g31400OsAffx.20293.1.S1_at10/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31400Os.26999.2.A1_at3/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31420Os.54325.1.S1_at11/1110+16146756..16147689transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31440Os.46900.1.S1_at11/1110+16151686..16152722transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31460Os.23194.1.S1_at10/1110+16156932..16157770expressed protein
LOC_Os10g31470Os.46671.1.S1_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31470Os.46671.1.S1_x_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31480Os.50536.1.S1_at11/1110+16164903..16165848expressed protein
LOC_Os10g31480Os.51848.1.S1_x_at1/1110+16164903..16165848expressed protein
LOC_Os10g31490NANA10+16168531..16169088transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31500OsAffx.121.1.S1_s_at11/1110+16171271..16172350transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.54325.1.S1_at--889--7791Chr10:16147328..16147352 (25 bp)
GGTCCCATGGTGGTGCGTACGCTCA
LOC_Os10g31420
Os.54325.1.S1_at--404--271Chr10:16147252..16147276 (25 bp)
ATATGGTTCCGGATCTGGCTCTGGC
LOC_Os10g31420
Os.54325.1.S1_at--704--4851Chr10:16147211..16147235 (25 bp)
GCTACGGTCCTCATGGTGGAGCATA
LOC_Os10g31420
Os.54325.1.S1_at--1037--9451Chr10:16147110..16147134 (25 bp)
TCTGGTTACGGCCAAGCTGGTTCAT
LOC_Os10g31420
Os.54325.1.S1_at--431--2671Chr10:16147097..16147121 (25 bp)
AAGCTGGTTCATACGGGCCCTACGG
LOC_Os10g31420
Os.54325.1.S1_at--90--7531Chr10:16147070..16147094 (25 bp)
GTGGCTATGCTCATGCAGGTGGTCA
LOC_Os10g31420
Os.54325.1.S1_at--838--451Chr10:16146970..16146994 (25 bp)
ATCTGCCTATAGTGGTGGGCACCCA
LOC_Os10g31420
Os.54325.1.S1_at--908--8631Chr10:16146955..16146979 (25 bp)
TGGGCACCCATAGGACTGTTATCTA
LOC_Os10g31420
Os.54325.1.S1_at--213--7471Chr10:16146911..16146935 (25 bp)
GTGTGCCAACATATATGGCCCTAAA
LOC_Os10g31420
Os.54325.1.S1_at--673--9191Chr10:16146845..16146869 (25 bp)
TGCCATGGCATAGTTGTCATAGCTG
LOC_Os10g31420
Os.54325.1.S1_at--638--7032Chr10:16146770..16146794 (25 bp)
GTACACTTTCTCCTTAATTGATCGG
LOC_Os10g31420
Target Sequence
GGTCCCATGGTGGTGCGTACGCTCAAGGAGGCGGTCAAGGTGGTGGTGGAGGTGGTGGGGCAAATGGTGGGTCTGGATAT
GGTTCCGGATCTGGCTCTGGCTATGGTCAGGCTGGTGGCTACGGTCCTCATGGTGGAGCATATGCTCAGGGTGGCGGACA
AGGTGGTGGTGGTGGCGGTGGATACAATGGTGGATCAGGTTATGGTTCTGGTTCTGGATCTGGTTACGGCCAAGCTGGTT
CATACGGGCCCTACGGTGGTGGCTATGCTCATGCAGGTGGTCAAGGTGGCGGCGGCGGCGGAGGGCAGAGTGGCCCAGGT
GGCCATGGATATGGAAGTGGCTCTGGAAGCGGTTCTGGATCTGCCTATAGTGGTGGGCACCCATAGGACTGTTATCTAAA
TGAACTATGTGAATGATGTGTGCCAACATATATGGCCCTAAAATAAATATGTACCAAATAATACGTCTTGTACCAAAATA
ATATGCCATGGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTAAATACAATATATGT
ACACTTTCTCCTTAATTGATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis