Browse Element(s) Details


Os.50536.1.S1_at

Description gb:AB059239.1
DB_XREF= gi:15887007
GEN=CAI1
TID=Os.50536.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50536 (NCBI UniGene Cluster)
DEF=Oryza sativa CAI1 mRNA for glycine rich protein, complete cds.
PROD=glycine rich protein
FL= gb:AK121664.1 gb:AB059239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3148011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31420Os.54325.1.S1_at11/1110+16146756..16147689transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31440Os.46900.1.S1_at11/1110+16151686..16152722transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31460Os.23194.1.S1_at10/1110+16156932..16157770expressed protein
LOC_Os10g31470Os.46671.1.S1_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31470Os.46671.1.S1_x_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31480Os.50536.1.S1_at11/1110+16164903..16165848expressed protein
LOC_Os10g31480Os.51848.1.S1_x_at1/1110+16164903..16165848expressed protein
LOC_Os10g31490NANA10+16168531..16169088transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31500OsAffx.121.1.S1_s_at11/1110+16171271..16172350transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31510OsAffx.6829.1.S1_at11/1110+16178272..16178850hypothetical protein
LOC_Os10g31520Os.13981.1.S1_at11/1110+16179695..16183455Ribosomal RNA assembly protein mis3, putative, expressed
LOC_Os10g31530Os.18711.1.S1_at11/1110+16186452..16187321expressed protein
LOC_Os10g31540OsAffx.18476.1.S1_at11/1110+16189643..16190224expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50536.1.S1_at--613--8571Chr10:16165418..16165442 (25 bp)
TGGTTCTGGATCTGGGTATGGACAA
LOC_Os10g31480
Os.50536.1.S1_at--565--7731Chr10:16165135..16165159 (25 bp)
GGTGGACACCCATAGTAGTGTTCCA
LOC_Os10g31480
Os.50536.1.S1_at--1112--2071Chr10:16165107..16165131 (25 bp)
ACATTAGCAGAGCTTCTATATTGAA
LOC_Os10g31480
Os.50536.1.S1_at--408--9511Chr10:16165093..16165117 (25 bp)
TCTATATTGAAAGCTGGGTTGGACA
LOC_Os10g31480
Os.50536.1.S1_at--719--7571Chr10:16165027..16165051 (25 bp)
GGGCTTCACTGAATGTAATAATTAG
LOC_Os10g31480
Os.50536.1.S1_at--403--1711Chr10:16164989..16165013 (25 bp)
ACCACAATGCGGTTGTAAGCTCTTG
LOC_Os10g31480
Os.50536.1.S1_at--761--4671Chr10:16164981..16165005 (25 bp)
GCGGTTGTAAGCTCTTGGTGTAATT
LOC_Os10g31480
Os.50536.1.S1_at--211--10191Chr10:16164937..16164961 (25 bp)
TATTCCAAATGCATGATAATTCACG
LOC_Os10g31480
Os.50536.1.S1_at--953--6451Chr10:16164923..16164947 (25 bp)
GATAATTCACGATCGAACCACACTG
LOC_Os10g31480
Os.50536.1.S1_at--340--6391Chr10:16164913..16164937 (25 bp)
GATCGAACCACACTGAGGACCATTT
LOC_Os10g31480
Os.50536.1.S1_at--703--2171Chr10:16164904..16164928 (25 bp)
ACACTGAGGACCATTTCGGTTTGAA
LOC_Os10g31480
Target Sequence 
TGGTTCTGGATCTGGGTATGGACAAGCCGGTGGGTATGGACCTTATGGTGGAGGATATGCTCAAGGAGGGGGTGGTGGCC
AAGGTGGCGGCGGCGGGCAGAATGGTGGATCTGGATATGGTTCTGGCTCTGGATCTGGATATGGTCAAGCCGNGGGATAT
GGGCCATATGGTGGTGGTTATGCTCAAGCTGGTGGCCAAGGTGGTGNCGGTGGTGGTGGACAAAGTGGTCCAGGTGGTAG
CGGGTATGGCAGCGGTTCTGGAAGTGGTTCTGGAAGTGCTTATGGTGGACACCCATAGTAGTGTTCCACCNACATTAGCA
GAGCTTCTATATTGAAAGCTGGGTTGGACAGATATATTACTGTTATTTTTACNTGGATAATAAGAAATAAAGGGCTTCAC
TGAATGTAATAATTAGAGTGGTGTTGTGCACCACAATGCGGTTGTAAGCTCTTGGTGTAATTGAATGTTTGATCAATATG
TTATTCCAAATGCATGATAATTCACGATCGAACCACACTGAGGACCATTTCGGTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis