Browse Element(s) Details


Os.18711.1.S1_at

Description gb:CA757605
DB_XREF= gi:25801644
DB_XREF=OE04A12-T3.ab1
CLONE=OE04A12-T3.ab1
TID=Os.18711.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycine-rich protein (OSJNBa0068N06.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3153011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31470Os.46671.1.S1_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31470Os.46671.1.S1_x_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31480Os.50536.1.S1_at11/1110+16164903..16165848expressed protein
LOC_Os10g31480Os.51848.1.S1_x_at1/1110+16164903..16165848expressed protein
LOC_Os10g31490NANA10+16168531..16169088transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31500OsAffx.121.1.S1_s_at11/1110+16171271..16172350transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31510OsAffx.6829.1.S1_at11/1110+16178272..16178850hypothetical protein
LOC_Os10g31520Os.13981.1.S1_at11/1110+16179695..16183455Ribosomal RNA assembly protein mis3, putative, expressed
LOC_Os10g31530Os.18711.1.S1_at11/1110+16186452..16187321expressed protein
LOC_Os10g31540OsAffx.18476.1.S1_at11/1110+16189643..16190224expressed protein
LOC_Os10g31550OsAffx.18477.1.S1_at11/1110+16193108..16193527hypothetical protein
LOC_Os10g31550Os.53910.1.S1_at1/1110+16193108..16193527hypothetical protein
LOC_Os10g31560Os.46670.1.S1_at11/1110+16201593..16202162expressed protein
LOC_Os10g31570OsAffx.30627.1.S1_at11/1110+16208344..16208952expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18711.1.S1_at--790--7871Chr10:16187026..16187050 (25 bp)
GGTTTTGGTTCTGGATCAGGCCAAG
LOC_Os10g31530
Os.18711.1.S1_at--631--9631Chr10:16187011..16187035 (25 bp)
TCAGGCCAAGGCTCGAGCTCGGGCT
LOC_Os10g31530
Os.18711.1.S1_at--874--551Chr10:16186904..16186928 (25 bp)
ATCCGGCGGTTATGGGACTGGCACT
LOC_Os10g31530
Os.18711.1.S1_at--530--1951Chr10:16186888..16186912 (25 bp)
ACTGGCACTGGCAGCGGAACCGGAT
LOC_Os10g31530
Os.18711.1.S1_at--251--5051Chr10:16186855..16186879 (25 bp)
GCAGACGGTGGTGCTTCCCCTACAT
LOC_Os10g31530
Os.18711.1.S1_at--1113--7391Chr10:16186725..16186749 (25 bp)
GTGATGCCAACCCTTAAAATTTTCA
LOC_Os10g31530
Os.18711.1.S1_at--237--10331Chr10:16186705..16186729 (25 bp)
TTTCATTTCTATGTGCCGACCAAAG
LOC_Os10g31530
Os.18711.1.S1_at--264--3611Chr10:16186677..16186701 (25 bp)
CATTGGAGCCCACGTTATCATTAAT
LOC_Os10g31530
Os.18711.1.S1_at--1128--2311Chr10:16186577..16186601 (25 bp)
AAAGGGCTCCATCATTTCTAGTTTG
LOC_Os10g31530
Os.18711.1.S1_at--1103--9591Chr10:16186566..16186590 (25 bp)
TCATTTCTAGTTTGTTGTACCCTTT
LOC_Os10g31530
Os.18711.1.S1_at--286--8211Chr10:16186482..16186506 (25 bp)
GGAATGCCAAAAGCTGTCACAGTGA
LOC_Os10g31530
Target Sequence 
GGTTTTGGTTCTGGATCAGGCCAAGGCTCGAGCTCGGGCTCGGTGAGCCAGGGTGGTGGGAGTGCGAGCGCCGGAGGAGG
CGGTGGTGGTGTTGCCGGTGGACAAGCTGGAGGTGTTGATGGATCCGGCGGTTATGGGACTGGCACTGGCAGCGGAACCG
GATCTGCTGNGGCAGACGGTGGTGCTTCCCCTACATCCTCCCCGCCATATGCAAATGCCAATGCAANTGGCGATGGTAAC
GGCAACGGTGGTGGCCAAAGCNGGTGGGAGCGGAAGCGGTGGGGGTGGTGGATCTGGTTACGGTGATGCCAACCCTTAAA
ATTTTCATTTCTATGTGCCGACCAAAGTTACATTGGAGCCCACGTTATCATTAATAATTTCATTCACCTTGATATGGTAG
TATTTGTTTTGTTTTGATTTTATCCTTTGATGTATTAGGGAGCAACTAATAAAGGGCTCCATCATTTCTAGTTTGTTGTA
CCCTTTTTTCTCTTTTGGAAGGAATTTTAATTAGTTAANNNNNTGTATCACTTTTAGAGTTCAAGGGAATGCCAAAAGCT
GTCACAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis