Browse Element(s) Details


Os.46670.1.S1_at

Description gb:NM_196794.1
DB_XREF= gi:37534947
TID=Os.46670.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0039C14.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0039C14.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3156011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31510OsAffx.6829.1.S1_at11/1110+16178272..16178850hypothetical protein
LOC_Os10g31520Os.13981.1.S1_at11/1110+16179695..16183455Ribosomal RNA assembly protein mis3, putative, expressed
LOC_Os10g31530Os.18711.1.S1_at11/1110+16186452..16187321expressed protein
LOC_Os10g31540OsAffx.18476.1.S1_at11/1110+16189643..16190224expressed protein
LOC_Os10g31550OsAffx.18477.1.S1_at11/1110+16193108..16193527hypothetical protein
LOC_Os10g31550Os.53910.1.S1_at1/1110+16193108..16193527hypothetical protein
LOC_Os10g31560Os.46670.1.S1_at11/1110+16201593..16202162expressed protein
LOC_Os10g31570OsAffx.30627.1.S1_at11/1110+16208344..16208952expressed protein
LOC_Os10g31580NANA10+16215141..16216544retrotransposon protein, putative, unclassified
LOC_Os10g31590NANA10+16222075..16228185retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46670.1.S1_at--400--3611Chr10:16202106..16202130 (25 bp)
CATTGTGATGTTGGGCATTGGGTTA
LOC_Os10g31560
Os.46670.1.S1_at--139--7891Chr10:16202086..16202110 (25 bp)
GGTTAGCCAATGCTTCGAGTACTTC
LOC_Os10g31560
Os.46670.1.S1_at--483--3191Chr10:16202079..16202103 (25 bp)
CAATGCTTCGAGTACTTCTAATGGA
LOC_Os10g31560
Os.46670.1.S1_at--801--1951Chr10:16201988..16202012 (25 bp)
ACTGGATCTAGTGTGAGTATCGTAA
LOC_Os10g31560
Os.46670.1.S1_at--664--2991Chr10:16201964..16201988 (25 bp)
AATGAGGGAGGCTCTGTCCACGGAA
LOC_Os10g31560
Os.46670.1.S1_at--1023--7011Chr10:16201899..16201923 (25 bp)
GTACAGTGGATCTGGGCATGGTTCT
LOC_Os10g31560
Os.46670.1.S1_at--327--7811Chr10:16201873..16201897 (25 bp)
GGTCTGGTCGAGGCTCAAGCTCAAG
LOC_Os10g31560
Os.46670.1.S1_at--570--2691Chr10:16201857..16201881 (25 bp)
AAGCTCAAGCCAGGTCGGTCCAGAC
LOC_Os10g31560
Os.46670.1.S1_at--623--1031Chr10:16201846..16201870 (25 bp)
AGGTCGGTCCAGACCCATACCGTGG
LOC_Os10g31560
Os.46670.1.S1_at--512--3691Chr10:16201764..16201788 (25 bp)
CTATGGATCTAGTGGTTATGGGTCT
LOC_Os10g31560
Os.46670.1.S1_at--20--3451Chr10:16201711..16201735 (25 bp)
CATCTATGAACGGTGACTTCCCGGG
LOC_Os10g31560
Target Sequence 
CATTGTGATGTTGGGCATTGGGTTAGCCAATGCTTCGAGTACTTCTAATGGAAATGGCACCGGATGGGGAGAGGGTGGTG
GATCTATTGACGGGGCCGGTGGAGGGTCCGGGAGTGGTACTGGATCTAGTGTGAGTATCGTAAATGAGGGAGGCTCTGTC
CACGGAAGTGGTGGTGGTGGTGGTGGAGGCGGCAATGGTGGTGGACGGTACAGTGGATCTGGGCATGGTTCTGGGTCTGG
TCGAGGCTCAAGCTCAAGCCAGGTCGGTCCAGACCCATACCGTGGGTCTTCTANTGCTGGTGGTACAGGTGGCGGTGAAG
GCGGTGGGCGAGCGGATGGCTACTATGGATCTAGTGGTTATGGGTCTGGAAGTGGCACCGGTGTTGGCTCTANTGCATCT
ATGAACGGTGACTTCCCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis