Browse Element(s) Details


Os.13981.1.S1_at

Description gb:AK070158.1
DB_XREF= gi:32980182
TID=Os.13981.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0068N06.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045I05, full insert sequence.
FL= gb:AK070158.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3152011/11Ribosomal RNA assembly protein mis3, putative, expressed
LOC_Os01g516201/11Ribosomal RNA assembly protein mis3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31460Os.23194.1.S1_at10/1110+16156932..16157770expressed protein
LOC_Os10g31470Os.46671.1.S1_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31470Os.46671.1.S1_x_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31480Os.50536.1.S1_at11/1110+16164903..16165848expressed protein
LOC_Os10g31480Os.51848.1.S1_x_at1/1110+16164903..16165848expressed protein
LOC_Os10g31490NANA10+16168531..16169088transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31500OsAffx.121.1.S1_s_at11/1110+16171271..16172350transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31510OsAffx.6829.1.S1_at11/1110+16178272..16178850hypothetical protein
LOC_Os10g31520Os.13981.1.S1_at11/1110+16179695..16183455Ribosomal RNA assembly protein mis3, putative, expressed
LOC_Os10g31530Os.18711.1.S1_at11/1110+16186452..16187321expressed protein
LOC_Os10g31540OsAffx.18476.1.S1_at11/1110+16189643..16190224expressed protein
LOC_Os10g31550OsAffx.18477.1.S1_at11/1110+16193108..16193527hypothetical protein
LOC_Os10g31550Os.53910.1.S1_at1/1110+16193108..16193527hypothetical protein
LOC_Os10g31560Os.46670.1.S1_at11/1110+16201593..16202162expressed protein
LOC_Os10g31570OsAffx.30627.1.S1_at11/1110+16208344..16208952expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13981.1.S1_at--338--5992Chr01:29975800..29975824 (25 bp)
GAGACTCGAGTCTTATGTTGCAAGT
LOC_Os01g51620
Os.13981.1.S1_at--446--1111Chr10:16180155..16180179 (25 bp)
AGTGTGACAACTTTTTCTAGCCAAA
LOC_Os10g31520
Os.13981.1.S1_at--732--2431Chr10:16180085..16180109 (25 bp)
AAAATTTGCGGCCTTTTGGCTCTCT
LOC_Os10g31520
Os.13981.1.S1_at--657--10871Chr10:16180070..16180094 (25 bp)
TTGGCTCTCTGCTTGTTGTAAAAGT
LOC_Os10g31520
Os.13981.1.S1_at--451--7671Chr10:16180030..16180054 (25 bp)
GGGTTGTGTAACTGTTTGTGCCCAA
LOC_Os10g31520
Os.13981.1.S1_at--145--10251Chr10:16180016..16180040 (25 bp)
TTTGTGCCCAATATGCCGTGGAGTA
LOC_Os10g31520
Os.13981.1.S1_at--989--8031Chr10:16179997..16180021 (25 bp)
GGAGTAGCTCTGATCTGCTTGTCTC
LOC_Os10g31520
Os.13981.1.S1_at--256--5991Chr10:16179938..16179962 (25 bp)
GAGACAGCTTCTCCATGTAGATCAG
LOC_Os10g31520
Os.13981.1.S1_at--660--1151Chr10:16179870..16179894 (25 bp)
AGTCTGAACTGTCATGTCGTTGCCT
LOC_Os10g31520
Os.13981.1.S1_at--14--6691Chr10:16179852..16179876 (25 bp)
GTTGCCTTGCCTCTTTGTGAAAGTC
LOC_Os10g31520
Os.13981.1.S1_at--732--4451Chr10:16179768..16179792 (25 bp)
GCCTATTTGCCTTTTCTACCTAGAA
LOC_Os10g31520
Target Sequence 
GAGACTCGAGTCTTATGTTGCAAGTAATGAAGGNTCACGCCCAAAAAAGAAGCACAAATCGTCCAAGTCCAAGTAANTCG
CANCCTGAATGAACCATGACCCCCGGTTAGTGTGACAACTTTTTCTAGCCAAATCATGCTAGCAGCATCCCNATTCAAAG
TTCCTGATGGCGATTGAACAAAATTTGCGGCCTTTTGGCTCTCTGCTTGTTGTAAAAGTAGTTGTCATCTGTATGGGTTG
TGTAACTGTTTGTGCCCAATATGCCGTGGAGTAGCTCTGATCTGCTTGTCTCCTTGGGGTAGCTCTGATGGCTCGTGATG
AGAGTTGAGACAGCTTCTCCATGTAGATCAGAGCTACAACGTGATGTAGACATGAGCATCTTCGCTGGTGCAGCAGTCTG
AACTGTCATGTCGTTGCCTTGCCTCTTTGTGAAAGTCACAAAGACAATGCATCATCGACAAATTTACACCCAGCAACGGT
CTCTGCCTCGTCGATCGCCTATTTGCCTTTTCTACCTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis