Browse Element(s) Details


OsAffx.27523.3.S1_at

Description gb:NM_196769.1
DB_XREF= gi:37534897
TID=OsAffx.27523.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0068N06.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3131011/11transposon protein, putative, unclassified
LOC_Os05g267405/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31280OsAffx.18472.1.S1_at11/1110+16077908..16078688hypothetical protein
LOC_Os10g31290Os.46672.1.S1_at11/1110+16079569..16086346expressed protein
LOC_Os10g31300OsAffx.27523.2.S1_at11/1110+16088727..16090054hypothetical protein
LOC_Os10g31310OsAffx.27523.3.S1_x_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.3.S1_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.4.S1_at3/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31320Os.51176.1.S1_at11/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31320Os.11040.1.S1_x_at10/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51848.1.S1_x_at11/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51929.1.S1_at9/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31340NANA10+16108759..16109793hypothetical protein
LOC_Os10g31350OsAffx.8061.1.S1_at10/1110+16115851..16118858transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27523.3.S1_at--1070--1591Chr10:16093585..16093946 (25 bp)
AGCTGCAACGCGGTTGATAAATGGC
LOC_Os10g31310
OsAffx.27523.3.S1_at--912--4751Chr10:16093586..16093947 (25 bp)
GCTGCAACGCGGTTGATAAATGGCA
LOC_Os10g31310
OsAffx.27523.3.S1_at--864--8991Chr10:16093588..16093949 (25 bp)
TGCAACGCGGTTGATAAATGGCACG
LOC_Os10g31310
OsAffx.27523.3.S1_at--949--2592Chr10:16093591..16093952 (25 bp)
AACGCGGTTGATAAATGGCACGCCC
LOC_Os10g31310
OsAffx.27523.3.S1_at--935--1812Chr10:16093933..16093953 (21 bp)
ACGCGGTTGATAAATGGCACGCCCC
LOC_Os10g31310
OsAffx.27523.3.S1_at--248--4131Chr10:16093933..16093954 (22 bp)
CGCGGTTGATAAATGGCACGCCCCT
LOC_Os10g31310
OsAffx.27523.3.S1_at--327--10851Chr10:16094168..16094192 (25 bp)
TTGGAAACTGACAACATAGAGGTGT
LOC_Os10g31310
OsAffx.27523.3.S1_at--353--5551Chr10:16094171..16094195 (25 bp)
GAAACTGACAACATAGAGGTGTTCA
LOC_Os10g31310
OsAffx.27523.3.S1_at--1146--5612Chr10:16094177..16094201 (25 bp)
GACAACATAGAGGTGTTCAAGGCTC
LOC_Os10g31310
OsAffx.27523.3.S1_at--308--3272Chr10:16094179..16094203 (25 bp)
CAACATAGAGGTGTTCAAGGCTCTG
LOC_Os10g31310
OsAffx.27523.3.S1_at--225--2092Chr10:16094181..16094205 (25 bp)
ACATAGAGGTGTTCAAGGCTCTGTC
LOC_Os10g31310
Target Sequence 
AGCTGCAACGCGGTTGATAAATGGCACGCCCCTCCCGAAGGTTCAGCAAAGGTAAATGTGGATGCTGGTTTTATAGAAGA
CACAGGAGTTTCAGCTGCTGGAATCATCATTACGGACTGCAGGGGTTTAGTGCTGTTTGCTGCGCAAAAAACTCTGAAAT
CCTGTGCTACTGCTGTCCAAGCTGAGGCATTGGCATGTCTAGAAGGATTAAGGGCAGCCATGGAATGGATTCATATGCCA
ATAATCTTGGAAACTGACAACATAGAGGTGTTCAAGGCTCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27523.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis