Browse Element(s) Details


OsAffx.20172.1.S1_at

Description tigr:9638.m03485
TID=OsAffx.20172.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative glutathione S-transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3873011/11glutathione S-transferase GSTU6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38660NANA10+20277801..20278597glutathione S-transferase GSTU6, putative
LOC_Os10g38664NANA10+20279232..20279933expressed protein
LOC_Os10g38670Os.21842.1.S1_at11/1110+20280396..20281652glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38680OsAffx.27523.1.S1_x_at11/1110+20282048..20283534hypothetical protein
LOC_Os10g38680OsAffx.27523.3.S1_x_at1/1110+20282048..20283534hypothetical protein
LOC_Os10g38690OsAffx.18569.1.S1_x_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.18569.1.S1_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.22609.1.S1_x_at1/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38700Os.14444.1.S1_at11/1110+20289681..20290839glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.9775.1.S1_at11/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.46635.1.S1_x_at1/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38720Os.46825.1.S1_at11/1110+20299403..20300301Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730OsAffx.20172.1.S1_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730OsAffx.20172.1.S1_x_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.4762.1.S1_at11/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.46634.1.S1_x_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.149.1.S1_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38750OsAffx.20171.1.S1_at11/1110+20309753..20312847transposon protein, putative, Mutator sub-class
LOC_Os10g38760OsAffx.30713.1.S1_x_at9/1110+20313372..20313827hypothetical protein
LOC_Os10g38760OsAffx.30713.1.S1_at6/1110+20313372..20313827hypothetical protein
LOC_Os10g38770OsAffx.18570.1.S1_at11/1110+20314720..20315200GRF zinc finger family protein
LOC_Os10g38780Os.9101.1.S1_at11/1110+20316247..20317266glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38790OsAffx.18571.1.S1_at10/1110+20317401..20318318hypothetical protein
LOC_Os10g38800OsAffx.30714.1.S1_x_at11/1110+20322783..20325191Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20172.1.S1_at--373--4331Chr10:20301669..20301693 (25 bp)
CCATCGCCGAGTCGCGGGTCATCGT
LOC_Os10g38730
OsAffx.20172.1.S1_at--964--7691Chr10:20301818..20301842 (25 bp)
GGGTCACCGTGGTACACGATCCTGT
LOC_Os10g38730
OsAffx.20172.1.S1_at--312--7831Chr10:20301819..20301843 (25 bp)
GGTCACCGTGGTACACGATCCTGTT
LOC_Os10g38730
OsAffx.20172.1.S1_at--183--7511Chr10:20301826..20301850 (25 bp)
GTGGTACACGATCCTGTTCGCCCGG
LOC_Os10g38730
OsAffx.20172.1.S1_at--909--2171Chr10:20301831..20301855 (25 bp)
ACACGATCCTGTTCGCCCGGGAGAG
LOC_Os10g38730
OsAffx.20172.1.S1_at--491--1371Chr10:20301900..20301924 (25 bp)
AGACGGTAGAGGCAGGCGCGTTCAG
LOC_Os10g38730
OsAffx.20172.1.S1_at--892--4551Chr10:20301915..20301939 (25 bp)
GCGCGTTCAGGGATCGCTCCTCCGA
LOC_Os10g38730
OsAffx.20172.1.S1_at--92--7711Chr10:20302026..20302050 (25 bp)
GGTGGTTCAGGGTGATCGAGAAGAT
LOC_Os10g38730
OsAffx.20172.1.S1_at--697--9371Chr10:20302041..20302065 (25 bp)
TCGAGAAGATGATCGGCGTCAGGAT
LOC_Os10g38730
OsAffx.20172.1.S1_at--78--1311Chr10:20302047..20302071 (25 bp)
AGATGATCGGCGTCAGGATCATGGA
LOC_Os10g38730
OsAffx.20172.1.S1_at--612--8851Chr10:20302050..20302074 (25 bp)
TGATCGGCGTCAGGATCATGGACGC
LOC_Os10g38730
Target Sequence 
CCATCGCCGAGTCGCGGGTCATCGTGGAGTACCTCGACGAGGCCTTCGCCGCCGGCGCCGGCGGCAGCACGGGCGCCTCC
GTCCTCCCCTCCGACCCCTACGAGCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGGTGGGGTCACCGTG
GTACACGATCCTGTTCGCCCGGGAGAGGGGGGAGAAGGTGGAGGCGGCGGCGCGGGCCATCTCGGCGCTGGAGACGGTAG
AGGCAGGCGCGTTCAGGGATCGCTCCTCCGAGGGGAAGACGACAAACGCAGCGGCGGCGCCGTTCTTCGGCGGCGACAGC
ATCGGGTTCGTCGACGTGGTGCTCGGCAGCTACCTGGGGTGGTTCAGGGTGATCGAGAAGATGATCGGCGTCAGGATCAT
GGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis