Browse Element(s) Details


OsAffx.18570.1.S1_at

Description tigr:9638.m03489
TID=OsAffx.18570.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3877011/11GRF zinc finger family protein
LOC_Os12g064202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38700Os.14444.1.S1_at11/1110+20289681..20290839glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.9775.1.S1_at11/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.46635.1.S1_x_at1/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38720Os.46825.1.S1_at11/1110+20299403..20300301Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730OsAffx.20172.1.S1_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730OsAffx.20172.1.S1_x_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.4762.1.S1_at11/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.46634.1.S1_x_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.149.1.S1_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38750OsAffx.20171.1.S1_at11/1110+20309753..20312847transposon protein, putative, Mutator sub-class
LOC_Os10g38760OsAffx.30713.1.S1_x_at9/1110+20313372..20313827hypothetical protein
LOC_Os10g38760OsAffx.30713.1.S1_at6/1110+20313372..20313827hypothetical protein
LOC_Os10g38770OsAffx.18570.1.S1_at11/1110+20314720..20315200GRF zinc finger family protein
LOC_Os10g38780Os.9101.1.S1_at11/1110+20316247..20317266glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38790OsAffx.18571.1.S1_at10/1110+20317401..20318318hypothetical protein
LOC_Os10g38800OsAffx.30714.1.S1_x_at11/1110+20322783..20325191Leucine Rich Repeat family protein, expressed
LOC_Os10g38820Os.46836.1.S1_at9/1110+20331077..20333627bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18570.1.S1_at--506--5092Chr12:3081475..3081499 (25 bp)
GCACCGGTGAGTTGTTCTTGGGCAA
LOC_Os12g06420
OsAffx.18570.1.S1_at--1119--8091Chr10:20315100..20315124 (25 bp)
GGACCCAGCTGGTGGCTCGGACCTC
LOC_Os10g38770
OsAffx.18570.1.S1_at--622--9431Chr10:20315084..20315108 (25 bp)
TCGGACCTCGAGGACCCCGAAGAAT
LOC_Os10g38770
OsAffx.18570.1.S1_at--781--2211Chr10:20315055..20315079 (25 bp)
ACAAGAATTTTGTGAAGTGCCCTAA
LOC_Os10g38770
OsAffx.18570.1.S1_at--898--5951Chr10:20314944..20315050 (25 bp)
GAGAATACACCATACGCTTGCAGAT
LOC_Os10g38770
OsAffx.18570.1.S1_at--522--692Chr12:3081240..3081263 (24 bp)
ATGAGCAATTTTTGGCCGATGGCCA
LOC_Os12g06420
OsAffx.18570.1.S1_at--813--4231Chr10:20314883..20314907 (25 bp)
CCGATGGCCATGTAGGTCTGGGATA
LOC_Os10g38770
OsAffx.18570.1.S1_at--929--391Chr10:20314859..20314883 (25 bp)
ATCAGACAGGATATGAGCAGTTCAA
LOC_Os10g38770
OsAffx.18570.1.S1_at--417--9731Chr10:20314838..20314862 (25 bp)
TCAATGTTGAAGCACTGTCGTCGAT
LOC_Os10g38770
OsAffx.18570.1.S1_at--987--9971Chr10:20314799..20314823 (25 bp)
TACCATTGAAGGGATGTGCAGCACT
LOC_Os10g38770
OsAffx.18570.1.S1_at--1138--6971Chr10:20314759..20314783 (25 bp)
GTACCTGGCAGTTGTGCAAGCTTTG
LOC_Os10g38770
Target Sequence 
GCACCGGTGAGTTGTTCTTGGGCAAATGTCCATTGTGCGGGACCCAGCTGGTGGCTCGGACCTCGAGGACCCCGAAGAAT
CCAAACAAGAATTTTGTGAAGTGCCCTAATCTTGAGAATACACCATACGCTTGCAGATTTTTTATGTGGGAAGGTCAATA
TGAGCAATTTTTGGCCGATGGCCATGTAGGTCTGGGATATCAGACAGGATATGAGCAGTTCAATGTTGAAGCACTGTCGT
CGATGGGGATTGAGGGCTTACCATTGAAGGGATGTGCAGCACTGGGACGAATGTTAGTGTACCTGGCAGTTGTGCAAGCT
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis