Browse Element(s) Details


OsAffx.30713.1.S1_x_at

Description tigr:9633.m02912
TID=OsAffx.30713.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3184011/11hypothetical protein
LOC_Os10g387609/11hypothetical protein
LOC_Os07g143104/11expressed protein
LOC_Os08g105601/11Histone-like transcription factor and archaeal histone family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31780Os.18281.1.S1_at11/115+18427306..18431560Adaptor complexes medium subunit family protein, expressed
LOC_Os05g31800NANA5+18443340..18444094hypothetical protein
LOC_Os05g31810NANA5+18444499..18444810hypothetical protein
LOC_Os05g31820NANA5+18451071..18451625hypothetical protein
LOC_Os05g31830OsAffx.4494.1.S1_at11/115+18452306..18453831hypothetical protein
LOC_Os05g31840OsAffx.30713.1.S1_x_at11/115+18454676..18455221hypothetical protein
LOC_Os05g31840OsAffx.30713.1.S1_at11/115+18454676..18455221hypothetical protein
LOC_Os05g31850OsAffx.31069.1.S1_x_at2/115+18459146..18462204retrotransposon protein, putative, unclassified
LOC_Os05g31850OsAffx.31069.1.S1_at1/115+18459146..18462204retrotransposon protein, putative, unclassified
LOC_Os05g31860OsAffx.21161.1.S1_at2/115+18463059..18468265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31874OsAffx.27111.1.S1_at11/115+18469227..18474266retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30713.1.S1_x_at--1137--3973Chr10:20313840..20313864 (25 bp)
CGGTGGCCGCGATGCAGCTTGTTCT
NONE
OsAffx.30713.1.S1_x_at--564--6332Chr10:20313830..20313854 (25 bp)
GATGCAGCTTGTTCTGGCGCCGCCG
NONE
OsAffx.30713.1.S1_x_at--454--9412Chr10:20313778..20313802 (25 bp)
TCGTCCCGTGGAGGCTACATGTTGA
LOC_Os10g38760
OsAffx.30713.1.S1_x_at--623--3992Chr10:20313772..20313796 (25 bp)
CGTGGAGGCTACATGTTGAGCGACC
LOC_Os10g38760
OsAffx.30713.1.S1_x_at--272--1532Chr10:20313717..20313741 (25 bp)
AGCAGATGCTGCTGCTACAACAGCA
LOC_Os10g38760
OsAffx.30713.1.S1_x_at--808--1053Chr10:20313549..20313573 (25 bp)
AGGTGGACGCGGTTGTTCAGTCAAA
LOC_Os10g38760
OsAffx.30713.1.S1_x_at--821--10793Chr10:20313537..20313561 (25 bp)
TTGTTCAGTCAAAGCCGTGGTGTCG
LOC_Os10g38760
OsAffx.30713.1.S1_x_at--777--2355Chr10:20313527..20313551 (25 bp)
AAAGCCGTGGTGTCGCCGTTGCCGT
LOC_Os10g38760
OsAffx.30713.1.S1_x_at--907--4033Chr10:20313511..20313535 (25 bp)
CGTTGCCGTCCTCCGCGGATGTGAA
LOC_Os10g38760
OsAffx.30713.1.S1_x_at--281--652Chr10:20313425..20313449 (25 bp)
ATGCAGCTTGTTAATCGACCAGGGA
LOC_Os10g38760
OsAffx.30713.1.S1_x_at--358--8792Chr10:20313417..20313441 (25 bp)
TGTTAATCGACCAGGGAACATGCAT
LOC_Os10g38760
Target Sequence 
CGGTGGCCGCGATGCAGCTTGTTCTGGCGCCGCCGCCATGGTCCACCCGTCNNGNNCCACCNNNNNGNCGTCGTCGTCGT
CCCGTGGAGGCTACATGTTGAGCGACCGGNTCTACAGCCCNTCTCACNTCCGCCGCCAGCAGATGCTGCTGCTACAACAG
CAGCAGCTGCTGCAGGGGCAACGGCCGCCTTCGTCCTCCCCCTCGCCGGCGACGGCGCCCAGGGCGGCGAGGCAGAAGCC
GCTGCCATCGCCGCCGCCGCCTCCCTTTCNGGNGGAGGCGGCGAGGCAGAAGGAGGTAGAGAGGCAGGTGGACGCGGTTG
TTCAGTCAAAGCCGTGGTGTCGCCGTTGCCGTCCTCCGCGGATGTGAANAGGCCGCCNGNNGNGGAATCGGTGCCGGAGC
CAGNGCGAGCGGAGGAGGAGGCGGCCGNGATGCAGCTTGTTAATCGACCAGGGAACATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30713.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis