Browse Element(s) Details


OsAffx.27111.1.S1_at

Description tigr:9633.m02915
TID=OsAffx.27111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3187411/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31810NANA5+18444499..18444810hypothetical protein
LOC_Os05g31820NANA5+18451071..18451625hypothetical protein
LOC_Os05g31830OsAffx.4494.1.S1_at11/115+18452306..18453831hypothetical protein
LOC_Os05g31840OsAffx.30713.1.S1_x_at11/115+18454676..18455221hypothetical protein
LOC_Os05g31840OsAffx.30713.1.S1_at11/115+18454676..18455221hypothetical protein
LOC_Os05g31850OsAffx.31069.1.S1_x_at2/115+18459146..18462204retrotransposon protein, putative, unclassified
LOC_Os05g31850OsAffx.31069.1.S1_at1/115+18459146..18462204retrotransposon protein, putative, unclassified
LOC_Os05g31860OsAffx.21161.1.S1_at2/115+18463059..18468265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31874OsAffx.27111.1.S1_at11/115+18469227..18474266retrotransposon protein, putative, unclassified
LOC_Os05g31890Os.19001.1.S1_at11/115+18480757..18482380expressed protein
LOC_Os05g31900OsAffx.27112.1.S1_at10/115+18485818..18486687hypothetical protein
LOC_Os05g31910Os.50283.2.S1_at11/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31910Os.50283.1.S1_at10/115+18492310..18495507ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27111.1.S1_at--287--3651Chr05:18469801..18469825 (25 bp)
CTTCACATGGGCAGTAATTGCAAAC
LOC_Os05g31874
OsAffx.27111.1.S1_at--574--8251Chr05:18469810..18469834 (25 bp)
GGCAGTAATTGCAAACCAACACCTA
LOC_Os05g31874
OsAffx.27111.1.S1_at--658--5131Chr05:18469820..18469844 (25 bp)
GCAAACCAACACCTAGTTCTTCAGA
LOC_Os05g31874
OsAffx.27111.1.S1_at--805--5511Chr05:18469843..18469867 (25 bp)
GAAAAAGACAGCATTTTCCTGTAAA
LOC_Os05g31874
OsAffx.27111.1.S1_at--513--10291Chr05:18469857..18469881 (25 bp)
TTTCCTGTAAAAATCTCACCTTTGG
LOC_Os05g31874
OsAffx.27111.1.S1_at--353--7052Chr05:18469863..18469887 (25 bp)
GTAAAAATCTCACCTTTGGCTCTGT
LOC_Os05g31874
OsAffx.27111.1.S1_at--393--1751Chr05:18469874..18469898 (25 bp)
ACCTTTGGCTCTGTTCGTCATGCAG
LOC_Os05g31874
OsAffx.27111.1.S1_at--887--6711Chr05:18469886..18469910 (25 bp)
GTTCGTCATGCAGATTTCAGTTGGA
LOC_Os05g31874
OsAffx.27111.1.S1_at--811--3431Chr05:18469903..18469927 (25 bp)
CAGTTGGAGGGAAATCAGAATTGAC
LOC_Os05g31874
OsAffx.27111.1.S1_at--738--10751Chr05:18469923..18469947 (25 bp)
TTGACTGGGAATCACATGAACTCCA
LOC_Os05g31874
OsAffx.27111.1.S1_at--274--3011Chr05:18469949..18469973 (25 bp)
AATGACGTAATTAATGATCTTGGCA
LOC_Os05g31874
Target Sequence 
CTTCACATGGGCAGTAATTGCAAACCAACACCTAGTTCTTCAGAAAAAGACAGCATTTTCCTGTAAAAATCTCACCTTTG
GCTCTGTTCGTCATGCAGATTTCAGTTGGAGGGAAATCAGAATTGACTGGGAATCACATGAACTCCAGAATGACGTAATT
AATGATCTTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis