Browse Element(s) Details


OsAffx.27112.1.S1_at

Description tigr:9633.m02918
TID=OsAffx.27112.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3190010/11hypothetical protein
LOC_Os04g485001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31850OsAffx.31069.1.S1_x_at2/115+18459146..18462204retrotransposon protein, putative, unclassified
LOC_Os05g31850OsAffx.31069.1.S1_at1/115+18459146..18462204retrotransposon protein, putative, unclassified
LOC_Os05g31860OsAffx.21161.1.S1_at2/115+18463059..18468265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31874OsAffx.27111.1.S1_at11/115+18469227..18474266retrotransposon protein, putative, unclassified
LOC_Os05g31890Os.19001.1.S1_at11/115+18480757..18482380expressed protein
LOC_Os05g31900OsAffx.27112.1.S1_at10/115+18485818..18486687hypothetical protein
LOC_Os05g31910Os.50283.2.S1_at11/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31910Os.50283.1.S1_at10/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31914OsAffx.27113.1.S1_at11/115+18501496..18503220hypothetical protein
LOC_Os05g31920Os.23697.1.S1_at11/115+18503854..18512299zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27112.1.S1_at--219--5191Chr05:18486620..18486644 (25 bp)
GCAATGGCAAGAATGGCAATGACAA
LOC_Os05g31900
OsAffx.27112.1.S1_at--629--2951Chr05:18486609..18486633 (25 bp)
AATGGCAATGACAACGGTGGGAACG
LOC_Os05g31900
OsAffx.27112.1.S1_at--970--2991Chr05:18486604..18486628 (25 bp)
CAATGACAACGGTGGGAACGGCAAC
LOC_Os05g31900
OsAffx.27112.1.S1_at--951--8512Chr09:1187991..1188010 (20 bp)
TGGGAACGGCAACGGTTCTCCTTCT
NONE
OsAffx.27112.1.S1_at--807--2572Chr10:14084476..14084495 (20 bp)
AACGGCAACGGTTCTCCTTCTGCTA
NONE
OsAffx.27112.1.S1_at--376--2572Chr04:28700760..28700799 (25 bp)
AACGGTTCTCCTTCTGCTACCATTG
LOC_Os04g48500
OsAffx.27112.1.S1_at--790--7891Chr05:18486579..18486603 (25 bp)
GGTTCTCCTTCTGCTACCATTGCAA
LOC_Os05g31900
OsAffx.27112.1.S1_at--251--9091Chr05:18486568..18486592 (25 bp)
TGCTACCATTGCAACCACTATTGTA
LOC_Os05g31900
OsAffx.27112.1.S1_at--230--71Chr05:18486563..18486585 (23 bp)
ATTGCAACCACTATTGTATCACTAA
LOC_Os05g31900
OsAffx.27112.1.S1_at--967--5151Chr05:18486563..18486582 (20 bp)
GCAACCACTATTGTATCACTAAAAG
LOC_Os05g31900
OsAffx.27112.1.S1_at--100--10231NONE
TATTGTATCACTAAAAGTTCGATGT
NONE
Target Sequence 
GCAATGGCAAGAATGGCAATGACAACGGTGGGAACGGCAACGGTTCTCCTTCTGCTACCATTGCAACCACTATTGTATCA
CTAAAAGTTCGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis