Browse Element(s) Details


OsAffx.27113.1.S1_at

Description tigr:9633.m02922
TID=OsAffx.27113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3191411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31890Os.19001.1.S1_at11/115+18480757..18482380expressed protein
LOC_Os05g31900OsAffx.27112.1.S1_at10/115+18485818..18486687hypothetical protein
LOC_Os05g31910Os.50283.2.S1_at11/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31910Os.50283.1.S1_at10/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31914OsAffx.27113.1.S1_at11/115+18501496..18503220hypothetical protein
LOC_Os05g31920Os.23697.1.S1_at11/115+18503854..18512299zinc finger protein, putative, expressed
LOC_Os05g31930OsAffx.8166.1.S1_at1/115+18513950..18519323transposon protein, putative, unclassified
LOC_Os05g31940NANA5+18520805..18522969hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27113.1.S1_at--576--9691Chr05:18503120..18503144 (25 bp)
TCAACAGTACCCTCAGGAGAGTTAT
LOC_Os05g31914
OsAffx.27113.1.S1_at--199--4191Chr05:18503111..18503135 (25 bp)
CCCTCAGGAGAGTTATCATGCTCAA
LOC_Os05g31914
OsAffx.27113.1.S1_at--933--9611Chr05:18503096..18503120 (25 bp)
TCATGCTCAAAATAGTAGTCACTGT
LOC_Os05g31914
OsAffx.27113.1.S1_at--33--1751Chr05:18503059..18503083 (25 bp)
ACCTTGGGCTAAGATTTCGCTCGGA
LOC_Os05g31914
OsAffx.27113.1.S1_at--280--2511Chr05:18502981..18503005 (25 bp)
AACATCGGTGGCACATGGCCTCCAA
LOC_Os05g31914
OsAffx.27113.1.S1_at--835--3612Chr01:27873817..27874069 (25 bp)
CTTCCCCGTTGAATCCGACCTATGG
NONE
OsAffx.27113.1.S1_at--15--4071Chr05:18502819..18502843 (25 bp)
CGACCTATGGGAGCCCGCACAAGGA
LOC_Os05g31914
OsAffx.27113.1.S1_at--974--7631Chr05:18502811..18502835 (25 bp)
GGGAGCCCGCACAAGGAACAACATT
LOC_Os05g31914
OsAffx.27113.1.S1_at--226--431Chr05:18502777..18502801 (25 bp)
ATCTGAGTTTTCCTTGTTGACCGAC
LOC_Os05g31914
OsAffx.27113.1.S1_at--337--331Chr05:18502710..18502734 (25 bp)
AGGAGTTCCCTAGCAGGGTTAGCCT
LOC_Os05g31914
OsAffx.27113.1.S1_at--49--1531Chr05:18502699..18502723 (25 bp)
AGCAGGGTTAGCCTGGCCAACCACA
LOC_Os05g31914
Target Sequence 
TCAACAGTACCCTCAGGAGAGTTATCATGCTCAAAATAGTAGTCACTGTTGGCCCAAAGAAACCTTGGGCTAAGATTTCG
CTCGGAACCCCTACAACCCTACCGTCGTGGTCCGTCGCCCAATCCGAAACCACCATCCAAACATCGGTGGCACATGGCCT
CCAACACACCCGACCGACGCCCCTCCGCCAGCCGGCTTCCAGTCCTGCCAACGACAAGACTGCCACAACACCAGTCACCT
TGGCCAGCGCGCTGACCCAGGCCGCTTTCACCACGCTGCCTGCCGGCTTCCCCGTTGAATCCGACCTATGGGAGCCCGCA
CAAGGAACAACATTGCCTCGGCAATCTGAGTTTTCCTTGTTGACCGACCACCGCCTCCAGCCTGCCAAGAAGCTCTCCAC
AAAGAAGGGGAGGAGTTCCCTAGCAGGGTTAGCCTGGCCAACCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis