Browse Element(s) Details


Os.23697.1.S1_at

Description gb:AK069987.1
DB_XREF= gi:32980011
TID=Os.23697.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038G16, full insert sequence.
FL= gb:AK069987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3192011/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31890Os.19001.1.S1_at11/115+18480757..18482380expressed protein
LOC_Os05g31900OsAffx.27112.1.S1_at10/115+18485818..18486687hypothetical protein
LOC_Os05g31910Os.50283.2.S1_at11/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31910Os.50283.1.S1_at10/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31914OsAffx.27113.1.S1_at11/115+18501496..18503220hypothetical protein
LOC_Os05g31920Os.23697.1.S1_at11/115+18503854..18512299zinc finger protein, putative, expressed
LOC_Os05g31930OsAffx.8166.1.S1_at1/115+18513950..18519323transposon protein, putative, unclassified
LOC_Os05g31940NANA5+18520805..18522969hypothetical protein
LOC_Os05g31950OsAffx.14910.1.S1_at3/115+18529537..18530107hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003682molecular_functionchromatin binding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23697.1.S1_at--382--3951Chr05:18504429..18504453 (25 bp)
CGGAAGCGTTTCAGCGAGACACAAG
LOC_Os05g31920
Os.23697.1.S1_at--519--3051Chr05:18504384..18504408 (25 bp)
AATCGGGCACGGGTATACGAGCAGT
LOC_Os05g31920
Os.23697.1.S1_at--26--5691Chr05:18504288..18504312 (25 bp)
GACTTGGTCAGTCACTACAAAGCTC
LOC_Os05g31920
Os.23697.1.S1_at--749--2351Chr05:18504261..18504285 (25 bp)
AAAGCTCTCACCGTTGAGCATGGGT
LOC_Os05g31920
Os.23697.1.S1_at--358--4751Chr05:18504236..18504260 (25 bp)
GCTGACGCGGCTATGATATTTTGGT
LOC_Os05g31920
Os.23697.1.S1_at--928--8611Chr05:18504173..18504197 (25 bp)
TGGGCTTGCATTCTTTTTACACGAT
LOC_Os05g31920
Os.23697.1.S1_at--946--10331Chr05:18504158..18504182 (25 bp)
TTTACACGATTCTTTCCTCTTCCAT
LOC_Os05g31920
Os.23697.1.S1_at--1098--1611Chr05:18504077..18504101 (25 bp)
AGCTGGCTAATCTGTCCTGTAAATG
LOC_Os05g31920
Os.23697.1.S1_at--1082--5691Chr05:18504029..18504053 (25 bp)
GACTATGATCTTCCTGATTTTCCTT
LOC_Os05g31920
Os.23697.1.S1_at--22--4891Chr05:18503907..18503931 (25 bp)
GCTTTGTTCTGGCTGACTTGAGTGC
LOC_Os05g31920
Os.23697.1.S1_at--501--1131Chr05:18503887..18503911 (25 bp)
AGTGCCTGTTTTGGCGAAAATTTCA
LOC_Os05g31920
Target Sequence 
CGGAAGCGTTTCAGCGAGACACAAGCAGAACAATGGTGGCAAGAGAATCGGGCACGGGTATACGAGCAGTATAATGTTCG
AGTAGTCGACAAATCGGTTGGCAGTATTGATAATGATGTACATCATTGACATAAGAAATTTGACTTGGTCAGTCACTACA
AAGCTCTCAAAGCTCTCACCGTTGAGCATGGGTGCTGACGCGGCTATGATATTTTGGTTAGGCCCAGAAGAGGAGGGGCC
TGCTGTTTGAAAAATGTGGGCTTGCATTCTTTTTACACGATTCTTTCCTCTTCCATTTCCCTTGTGTGGAATGTAGAGTG
TTCAAGCAGAAGTTATGTAAATGGTTAGTGGCAGCTGGCTAATCTGTCCTGTAAATGCATAAGCAAGTGCATCAATTTTA
GACTATGATCTTCCTGATTTTCCTTTAATTGGCAAATATAGGTGCAAAATCTAAGTGATGATGATGAAGAATATTTGGTG
CTAATTGTAGATTGAGATGCAAAGTAGCTTTGAAAGATTTAAGCTTTGTTCTGGCTGACTTGAGTGCCTGTTTTGGCGAA
AATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis